Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02635 ATGGCCTCCAAAATCATCCTCCTCCGTCTTCCTCCTCTTATAATTACCATTTATACTGTTTTTCTCAAAATCCAAACAACCACTTCTTCACCCCAACCCCCTCTCATATTGCCTCTAATATCCCAGACACTCCCACATGGCTTTGTTTCTGTCCCAACTCCTTCTTCACGTAAGCTATCTTTCCACCACAACGTCACCTTAACCGTTTCACTCACCGTAGGCACGCCCCCACAGACCGTTACCATGGTCCTCGACACAGGCAGCGAACTCTCCTGGCTCCACTGCAAGAAAAACCAAAACATTGACTCTATCTTCAACCCACAACTCTCTTCCTCCTACACCCCTACACCCTGCACCTCAAACGTTTGCACCACCCGGACCCGAGATTTCCCCATACCCGTTTCCTGCGACCCGAGAAAGCTCTGCCACGCCACCGTCTCCTACGCTGACGCCACCTCCATAGAGGGGAACCTCGCCACCGACACGTTCTTCTTCTCTGGTTCGGGTCAACCGGGTATTATTTTCGGGTGCATGGACTCCGGGTTCAGCTCCAACACCAAGGAAGACTCCAAGACAACCGGGTTGATGGGTATGAACCGCGGGTCGCTCTCGTTTGTGACGCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCGGCCATGATTCCTCCGGCGTTTTACTCTTCGGCGATGCGAAACTCACGTGGTTGGGTCCTTTGAAGTACACGCCACTGGTGAAGATGAATACCCCATTACCCTACTTCGACCGGGTCGCGTACACGGTTCGTTTGATGGGTATTCGGGTCGGTTCAAAACCATTGCAGGTGCCCAAGTCAATTTTCGCGCCGGACCACACCGGGGCAGGACAGACAATGGTGGATTCGGGTACCCAGTTCACTTTCCTTCTCGGGTCGGTTTACACTGCTCTAAAGAACGAGTTTTTGGAACAGACGAAAGGGGTGCTGACCCTTTTGGAGGATCCAAATTTTGTGTTTGAAGGGGCGATGGATTTGTGTTTTCGGGTTAGAGGGGGTGTTGTGCCGACGGTGCCCGCCGTGACAATGGTGTTCGAGGGGGCGGAGATGGGTGTGTCCGGGGAGAGGCTATTGTATCGAGTGGGTGATGACGTGGGAAAGGGAAAAGATGTGTATTGTTTCACGTTTGGGAATTCAGATTTGTTGGGAATTGAGGCTTATGTGATTGGGCACCATCATCAGCAGAACGTGTGGATGGAGTTTGACTTGGTCAACTCAAGAGTTGGATTTGCTGACACAAGGATCAAGTGCAGCTACGCCTTCACCTCCGCCGTCATGGTCTTCTTCGTTGTTGAATATTCCGACTGGTGTGGTGGTCGGATTTACCATGGGGCTACCACGGTTCTGTTGCGTTAA 1392 0.5194 MASKIILLRLPPLIITIYTVFLKIQTTTSSPQPPLILPLISQTLPHGFVSVPTPSSRKLSFHHNVTLTVSLTVGTPPQTVTMVLDTGSELSWLHCKKNQNIDSIFNPQLSSSYTPTPCTSNVCTTRTRDFPIPVSCDPRKLCHATVSYADATSIEGNLATDTFFFSGSGQPGIIFGCMDSGFSSNTKEDSKTTGLMGMNRGSLSFVTQMGFPKFSYCISGHDSSGVLLFGDAKLTWLGPLKYTPLVKMNTPLPYFDRVAYTVRLMGIRVGSKPLQVPKSIFAPDHTGAGQTMVDSGTQFTFLLGSVYTALKNEFLEQTKGVLTLLEDPNFVFEGAMDLCFRVRGGVVPTVPAVTMVFEGAEMGVSGERLLYRVGDDVGKGKDVYCFTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRIKCSYAFTSAVMVFFVVEYSDWCGGRIYHGATTVLLR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02635 463 Gene3D Acid Proteases 60 230 IPR021109 -
Vian2g02635 463 Pfam Xylanase inhibitor N-terminal 69 231 IPR032861 -
Vian2g02635 463 Gene3D Acid Proteases 237 435 IPR021109 -
Vian2g02635 463 PANTHER ASPARTYL PROTEASE-RELATED 28 433 IPR001461 GO:0004190|GO:0006508
Vian2g02635 463 FunFam Aspartic proteinase PCS1 58 231 - -
Vian2g02635 463 FunFam Aspartic proteinase PCS1 235 432 - -
Vian2g02635 463 ProSiteProfiles Peptidase family A1 domain profile. 67 423 IPR033121 -
Vian2g02635 463 Pfam Xylanase inhibitor C-terminal 259 423 IPR032799 -
Vian2g02635 463 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
Vian2g02635 463 CDD pepsin_A_like_plant 66 425 IPR034161 -
Vian2g02635 463 SUPERFAMILY Acid proteases 67 426 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02635 Vian-Chr2 47068600 47073134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02635 35 312 Miscellaneous Gene Families AT1G44130 26.936 8.09e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02635 - - gmx:100783835 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02635 2 47068600 47073134 Vian2g02635 2 47068600 47073134 ECH