Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02601 ATGGACATGCATGTGTATGTACTTGATTTTGGGAACCGATTTTGCAATGGGTCAGGTCTTGGGTGGTGTCGAGTGTTGGAAGCATGGCATACAAAGTTTACCCGGAACGAGTTTTGCTTGGAGTCTAAGTCTACGATTGGGGTTGAATTCGCAACCAGAACATTACAGGTGGAGGGGAAGACTGTGAAGGCACAAATATGGGACACAGCTGGTCAAGAGAGGTATCGGGCTATCACGAGTGCATACTACAGAGGAGCAGTAGGTGCCTTGTTAGTGTATGACATAACGAAGAGACAAACATTTGAGAATGTACAAAGGTGGCTTCGTGAACTGAGGGACCATGCAGACTCCAACATCGTTATTATGTTGGCTGGAAACAAGTCTGACCTCAACCATCTCAGAGCAGTCTCTACCGATGATGCTCAAAGTTTGGCTGAGAGAGAGGGTTTGTCATTCCTAGAGACTTCAGCATTGGAGGCCTTCAATGTTGAGAAAGCATTTCAGACCATTTTGTTTGATATTTACCAAATTATGAGTAAAAAGGCACTCGCTGCACAGGAAGCAGCTTCCACTGCTAACGTTCCTCATGGGACTACCATAAATGTCTCAAATATGTCTGCTAGTGTCGAGAAGAAATCTTGTTGTTCCAATTAA 654 0.445 MDMHVYVLDFGNRFCNGSGLGWCRVLEAWHTKFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMLAGNKSDLNHLRAVSTDDAQSLAEREGLSFLETSALEAFNVEKAFQTILFDIYQIMSKKALAAQEAASTANVPHGTTINVSNMSASVEKKSCCSN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02601 217 SMART rho_sub_3 32 173 IPR001806 GO:0003924|GO:0005525
Vian2g02601 217 PANTHER DRAB11-RELATED 31 202 - -
Vian2g02601 217 SMART ran_sub_2 15 214 - -
Vian2g02601 217 NCBIfam small GTP-binding protein domain 32 170 IPR005225 GO:0005525
Vian2g02601 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 180 IPR027417 -
Vian2g02601 217 Gene3D - 28 215 IPR027417 -
Vian2g02601 217 FunFam ras-related protein RABA1f 11 215 - -
Vian2g02601 217 ProSiteProfiles small GTPase Ras family profile. 1 217 IPR001806 GO:0003924|GO:0005525
Vian2g02601 217 Pfam Ras family 31 175 IPR001806 GO:0003924|GO:0005525
Vian2g02601 217 SMART rab_sub_5 31 177 - -
Vian2g02601 217 SMART ras_sub_4 32 177 - -
Vian2g02601 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Vian2g02601 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Vian2g02601 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Vian2g02601 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Vian2g02601 217 CDD Rab11_like 31 175 - -
Vian2g02601 217 ProSiteProfiles small GTPase Rab1 family profile. 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02601 Vian-Chr2 46745409 46746218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02601 K07904 - gmx:100799521 348.206