Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02584 ATGCTGGATATGCGGTTGGGGCACGAGTTCTTGAGCTGCTTTGCCACAGAGATAAGTACAGTGTGGAAAGTACTATTTGGAAAGCCTTGGCAGACTGGCAAAAGGTTCTGTGGAATTCTGTCAGAGAAGAAATATCCACCTTGCACTCTTGAAAAGAAGATTATCGTAGATGTGAATCGTGCATTACATGACAAGATAGACTACTTTATACAAAGCCATTTTGATTGTTCACTCTTGAAAGTTGTGATGGTTGGCTTTAGCAAGCTTGTAGCTGATTCACTGGAGAAAGGAACCGAACATGAAGATGAATACATGATTAGTGAAAAAGAGCTTCTAGACATGGGGACGTTTAACTGTGGAGCATTTGTTGCTGGAATAGTACGGGGCGTTTTGGACGGTGCCGGATTTCCGGCTGTTGTAACTGCGCATTTTGTGCCTATGGAAGGTCAACAACGACCACGGACGACAATTTTGATAAAATTTGCTGAAGAGGTAAACCTGGTCGGTGGTTATTATGATGCTGGAGATAACGTTAAGTTTGGGTTGCCGATGGCCTTTACTACAACATTGTTAGCGTGGAGTGTGATTGAATTTGGAAGCTCAATGATGGACCAGATTGAAAACGCTAGAGCTGCTATCCGCTGGAGCACAGATTACCTTCTTAAGGCTGCCACCACCACCCCTGACACATTATATGTCCAAGTAGGAGACCCGAACATGGATCACAAGTGTTGGGAAAGGCCTGAAGATATGGACACTCCACGCAATGTGTATAAGGTATCAGCTCAAAACCCAGGATCGGATGTAGCAGCAGAGACAGCAGCTGCACTGGCAGCTTCTTCAATAGTATTCGGAGATTCGGATCCAGCGTATTCCTCCAAATTGCTTCAAGCAGCCATCAAAGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTACAGTGATTCTCTTGGTTCTGTTGTCTGTCCATTCTACTGCTCTTACTCCGGATACCATGATGAACTTCTGTGGGGTGCATCATGGATTTATAAAGCCTCAGGAACTAGCTCATACATGCAATATATTCGATCCAATGGCCACATTTTAGGTGCCGATGATGATGGTTTCTCCTTCAGCTGGGATGACAAGCGACCCGGAAATAAAATCCTCCTTTCCAAGGAATTCTTGGAGAAAAATTCAGAAGAGTTCCAATTATACAAGGCACATTCAGATAATTACATCTGTTCGCTAATGTCTGGAATACCTGGTTCTCAGGCTCAGTACACCCGAGGGGGGCTTCTTTACAAGGGGAGCGAGAGCAATTTGCAGTATGTGACATCGACGAGTCTCCTTCTGTTGACATACGCTAAGTATCTTTCTGCAAACGGGGGCGTTGTCAGATGTGGGACTTCAACGGTCACGGGTGAAAACCTCGTAGCACTAGCCAAAACACAAGTTGATTACGTTTTGGGCGATAATCCAAGAAAGATGTCGTATATGGTGGGTTTTGGGGAGAATTACCCAAAGCATGTCCATCACAGAGGTTCCTCTCTACCTTCGGTTCGTTCCAGGACTCAGCACATTTCCTGCAACGAGGGGTTTCAATATCTCTATGCAGGCTCTCCCAATCCAAATGAGCTTGTTGGAGCCATCGTAGGTGGTCCTGATAGCAATGATAACTTCTCCGATGATCGAAACAACTATCAGCAGTCAGAGCCAGCAACGTACATCAATGCACCCTTTGTAGGTGCTCTTGCCTATTTCTCTGCTAAACCACCAACCTATTATTAG 1770 0.4503 MLDMRLGHEFLSCFATEISTVWKVLFGKPWQTGKRFCGILSEKKYPPCTLEKKIIVDVNRALHDKIDYFIQSHFDCSLLKVVMVGFSKLVADSLEKGTEHEDEYMISEKELLDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVNLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMMDQIENARAAIRWSTDYLLKAATTTPDTLYVQVGDPNMDHKCWERPEDMDTPRNVYKVSAQNPGSDVAAETAAALAASSIVFGDSDPAYSSKLLQAAIKVFNFADRYRGSYSDSLGSVVCPFYCSYSGYHDELLWGASWIYKASGTSSYMQYIRSNGHILGADDDGFSFSWDDKRPGNKILLSKEFLEKNSEEFQLYKAHSDNYICSLMSGIPGSQAQYTRGGLLYKGSESNLQYVTSTSLLLLTYAKYLSANGGVVRCGTSTVTGENLVALAKTQVDYVLGDNPRKMSYMVGFGENYPKHVHHRGSSLPSVRSRTQHISCNEGFQYLYAGSPNPNELVGAIVGGPDSNDNFSDDRNNYQQSEPATYINAPFVGALAYFSAKPPTYY 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02584 589 FunFam Endoglucanase 155 585 - -
Vian2g02584 589 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 554 572 IPR033126 -
Vian2g02584 589 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 481 507 IPR018221 -
Vian2g02584 589 PANTHER ENDO-1,4-BETA-GLUCANASE 163 583 - -
Vian2g02584 589 Gene3D Trafficking protein particle complex subunit 3 83 155 - -
Vian2g02584 589 Gene3D - 156 587 IPR012341 GO:0005975
Vian2g02584 589 SUPERFAMILY Six-hairpin glycosidases 163 583 IPR008928 GO:0005975
Vian2g02584 589 Pfam Glycosyl hydrolase family 9 161 578 IPR001701 GO:0004553|GO:0005975
Vian2g02584 589 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 89 165 IPR024096 -
Vian2g02584 589 Pfam Transport protein particle (TRAPP) component 20 161 IPR007194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02584 Vian-Chr2 46542733 46555519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02584 162 582 Glycoside Hydrolase AT1G02800 63.658 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02584 - - var:108328044 850.506