Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02521 ATGGCAGGGGCGGAGAATAGCGACGGGAGCGGGAGTGAACGAGAATTAGCGGGAAATGGTAACAACGGGTTTTTGGAGTGTAGTGGTTCTGCTGGTAGTGAAGGGAACGACAGCGTTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAGTTTGCTGACGCTCTTGCTATCTACGAGCGTGTCTTGGAGAGCGATGGTGCAAATGTGGAGGCGCTCATTGGGAAAGGGATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTTTGAGAGTTTTTTTGAGGCTATCAAGCTGGATCCTCAAAATGCTCGTGCTCTCACACATTGCGGCATTTTGTATAAGGACGATGGTCGCCTGGTGGAGGCTGCAGAGTCGTATCAGAAGGCTTTACGAGTGGATCCTTCATACAGAGCAGCAGCTGAATGCCTTGCCATTGTGTTAACAGATATTGGTACCAACACAAAGCTTGCTGGAAACACTCAGGAAGGAATTAAAAAATATTTTGAAGCCCTCAAAGTAGATCCACATTATGCTCCTGCATACTACAATCTTGGTGTGGTCTATTCAGAAATGATGCAATATGACATGGCCCTCACTTTCTATGAAAAAGCTGCAGCAGAGAGGCCAGTTTATGCTGAAGCATATTGCAATATGGGTGTGATTTATAAAAATCGTGGTGACTTGGATTCAGCTATTTCTTGTTATGATAGGTGTTTAACTGTATCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTAGGAACGAAGGTTAAATTGGAGGGGGACATCAACCAAGGCGTGGCTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTACGAACTTGCCTTTCACTTCAATCCACATTGCGCGGAAGCATGTAACAATCTCGGTGTTATATATAAAGATCGTGAAAACCTTGATAAAGCAGTAGAGTGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCGTTGAATAATCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTACAGGGATGCTGGCGATATAACTGGAGCAATTAATGCTTACGAGCAATGTCTTAAGATTGACCCTGATTCTCGGAATGCTGGTCAGAATCGCTTACTTGCAATGAATTACATAGATGAAGGAATTGATGACACACTTTTTGAGGTTCACAGGAACTGGGGTAGGCGATTCATGAGACTATATCCACGTCACACATCATGGGGTAACTCAAAAGATCCTGATCGGCCCCTTGTGATAGGCTATGTTTCGCCTGATTATTTTACCCATTCTGTATCGTATTTCATTGAAGCACCTCTTGTATATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCTGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTTACAAAGAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGAAGGTTGCCGACATTGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACAGGTCATACTGCAAACAATAAATTGGGAATGATGGCATGTCGGCCTGCACCGGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCTCTGGCAGACCCTCCTGAAACAAAGCAGAAACACATCGAGGAGTTGGTTAGATTGCCAGAATGTTTCCTTTGTTACACCCCTTCCCCTGAGGCTGGCCCTGTTTCTGCAACTCCAGCACTTTCCAATGGCTTCATCACATTTGGTAGTTTCAACAATCTTGCTAAGATTACACCAAAGGTATTGAAGGTTTGGGCGAGGATATTGTGTGCAATTCCAAATTCGCGCCTTGTGGTAAAATGCAAACCATTTTGTTGTGATAGTGTGCGGCAAAGATTCCTTTCAACACTAGAGCAGTTAGGCTTAGAGCCGCTACGTGTTGATCTTTTGCCCCTTATTCTGCTTAACCATGATCATATGCATGCCTATTCTCTAATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACAACTTGTGAATCTTTATATATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTACACGCACACAATGTTGGTGTTAGTCTTCTCAGAAACGTTGGAATGGAGCATTTGATTGCCAGAAATGAAGATGAGTACGTTGAATTGGCTAAGAAGTTGGCTTCTGACATTTCCTCACTACATAATTTGAGAATGAGTCTACGAGATCTCATGTCTAAGTCCCCTCTCTGTGATGGTGCAAAATTTACCTTAGGTCTAGAGTCAACTTACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTAGAAGAAGTTGCTATGGGTGACATGACAAATAAAAATTCTGAGCAATCAAGAATTGCAAACTCAAGGGAGGACAGTCCTGGATCTGTCAAGGCCAATGGATTTGATACAATGCCCGTGTCAAAGCTTAACATAGACAGCTGCGAAGAAAACGGTGGGTCATCAAATGGTGGCGGTAGTAAACAAGGAAAAAGACAGGTTAATGTTGAATTCCATCCGAGAATCCTTTTGTAG 2781 0.4189 MAGAENSDGSGSERELAGNGNNGFLECSGSAGSEGNDSVSYANVLRSRNKFADALAIYERVLESDGANVEALIGKGICLQMQNKGRLAFESFFEAIKLDPQNARALTHCGILYKDDGRLVEAAESYQKALRVDPSYRAAAECLAIVLTDIGTNTKLAGNTQEGIKKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAAAERPVYAEAYCNMGVIYKNRGDLDSAISCYDRCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDITGAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGIDDTLFEVHRNWGRRFMRLYPRHTSWGNSKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADAKTIRFREKVTKKGGIWKDIYGIDEKKVADIVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHIEELVRLPECFLCYTPSPEAGPVSATPALSNGFITFGSFNNLAKITPKVLKVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMHAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLRNVGMEHLIARNEDEYVELAKKLASDISSLHNLRMSLRDLMSKSPLCDGAKFTLGLESTYRNMWHRYCRGDVPSLKRMELLEEVAMGDMTNKNSEQSRIANSREDSPGSVKANGFDTMPVSKLNIDSCEENGGSSNGGGSKQGKRQVNVEFHPRILL 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02521 926 MobiDBLite consensus disorder prediction 858 877 - -
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Vian2g02521 926 ProSiteProfiles TPR repeat region circular profile. 178 209 - -
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Vian2g02521 926 Gene3D Glycogen Phosphorylase B; 640 814 - -
Vian2g02521 926 ProSiteProfiles TPR repeat region circular profile. 212 244 - -
Vian2g02521 926 ProSiteProfiles TPR repeat region circular profile. 321 353 - -
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Vian2g02521 926 Pfam Tetratricopeptide repeat 42 82 - -
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Vian2g02521 926 MobiDBLite consensus disorder prediction 896 912 - -
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Vian2g02521 926 Gene3D Tetratricopeptide repeat domain 34 143 IPR011990 GO:0005515
Vian2g02521 926 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 253 451 - -
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 355 388 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 321 354 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 212 245 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 144 177 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 178 211 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 287 320 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 355 388 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 69 102 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 35 68 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 253 286 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 389 422 IPR019734 GO:0005515
Vian2g02521 926 SMART tpr_5 103 136 IPR019734 GO:0005515
Vian2g02521 926 Pfam Tetratricopeptide repeat 103 135 IPR019734 GO:0005515
Vian2g02521 926 SUPERFAMILY TPR-like 209 425 IPR011990 GO:0005515
Vian2g02521 926 ProSiteProfiles TPR repeat region circular profile. 103 135 - -
Vian2g02521 926 ProSiteProfiles TPR repeat region circular profile. 389 421 - -
Vian2g02521 926 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 34 860 - -
Vian2g02521 926 SUPERFAMILY TPR-like 338 788 IPR011990 GO:0005515
Vian2g02521 926 Gene3D Tetratricopeptide repeat domain 144 257 IPR011990 GO:0005515
Vian2g02521 926 Gene3D Tetratricopeptide repeat domain 258 443 IPR011990 GO:0005515
Vian2g02521 926 Gene3D - 459 639 - -
Vian2g02521 926 SMART sel1 178 209 IPR006597 -
Vian2g02521 926 SMART sel1 287 318 IPR006597 -
Vian2g02521 926 SMART sel1 321 352 IPR006597 -
Vian2g02521 926 MobiDBLite consensus disorder prediction 857 918 - -
Vian2g02521 926 Pfam Glycosyl transferase family 41 471 625 IPR029489 -
Vian2g02521 926 Pfam Glycosyl transferase family 41 642 822 IPR029489 -
Vian2g02521 926 Pfam Tetratricopeptide repeat 357 382 - -
Vian2g02521 926 SUPERFAMILY TPR-like 38 261 IPR011990 GO:0005515
Vian2g02521 926 Pfam Tetratricopeptide repeat 178 206 IPR001440 GO:0005515
Vian2g02521 926 Pfam Tetratricopeptide repeat 321 354 IPR001440 GO:0005515
Vian2g02521 926 Pfam Tetratricopeptide repeat 389 421 IPR001440 GO:0005515
Vian2g02521 926 Pfam Tetratricopeptide repeat 212 245 IPR001440 GO:0005515
Vian2g02521 926 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02521 Vian-Chr2 45856525 45873458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02521 197 890 Glycosyltransferase AT3G11540 63.022 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02521 K09667 - gmx:100785784 1658.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02521 2 45856525 45873458 Vian2g02521 2 45856525 45873458 ECH