Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02508 ATGGAAGCAGTAGCAGGTTCCCGCCATTTCTCCACTCTTTCCCTTTCTTTATCTCACAACAGAACCCTGCGTTCTTCTTCTCCCAAATCAGTCAAGCTTTCTCTTTCTTCCACCAAGGCTTCCTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCCAACTCCAAGGGTGTGGCCGTGAGAAGGGACCTCGGATTGGTGGTGAAGGCTGAAATGTTTGGCCAATTGACAAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTCTAGAAGCCGATGTTAGTCTTCCTGTTGTCCGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGGGTGAGACCGGATCAGCAATTGGTTAAGATTGTAAATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTGCAAGGAGTTGGGAAGACAACCGTCTGTGCAAAGTTGGCAAATTATCTTAAGAAACAGGGAAAAAGTTGCATGCTGGTTGCTTGCGATGTATACAGACCTGCTGCTATTGACCAGCTTTCTATTTTGGGAAAACAGGTAGATGTTCCTGTCTACACAGCAGGTACCGATGTTAAACCTTCAGAAATTGCCAAACAAGGCTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACCGCCGGTAGACTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTTAAAAGGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCTGCAGCATTAGTGACTACTTTCAATGTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAACTAGTAGGACGAGGGGAACGAATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGCATACTTGGAATGGGAGATGTTCTTTCTTTTGTAGAGAAGGCACAAGAAGTTATGCGTAAAGAAGATGCTGAGGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACTCGTACGGTTGCCAAAATGGGTTCCGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTTCTCAGATTAGAGACGCAGAGAAGAATTTGCTGAATATGGAAGCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAAAAGCCGGAACTGTTGGCAGAATCCCCTGTCAGGAGAAAAAGAGTTGCTGTGGAGTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAGCTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGCGGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGGAAGAGATCGGAATCAAGGAGTGTATTTGTGGACTCAACAACCGGAAGACCAGCTCCTCGTGGTTTTGGGAGCAAAAGTTGA 1695 0.4519 MEAVAGSRHFSTLSLSLSHNRTLRSSSPKSVKLSLSSTKASLSSRNWFAKEVWGWVNSNSKGVAVRRDLGLVVKAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVNDELVQLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVACDVYRPAAIDQLSILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRKEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPSQIRDAEKNLLNMEAMIEAMTPEEREKPELLAESPVRRKRVAVESGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFVDSTTGRPAPRGFGSKS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02508 564 FunFam Signal recognition particle 54 kDa subunit 167 360 - -
Vian2g02508 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 429 IPR027417 -
Vian2g02508 564 Pfam SRP54-type protein, GTPase domain 176 371 IPR000897 GO:0005525|GO:0006614
Vian2g02508 564 Gene3D - 80 381 IPR042101 -
Vian2g02508 564 Pfam SRP54-type protein, helical bundle domain 81 158 IPR013822 GO:0005525|GO:0006614
Vian2g02508 564 CDD SRP_G 177 369 - -
Vian2g02508 564 MobiDBLite consensus disorder prediction 526 564 - -
Vian2g02508 564 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 77 511 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vian2g02508 564 Gene3D - 166 360 IPR027417 -
Vian2g02508 564 MobiDBLite consensus disorder prediction 526 545 - -
Vian2g02508 564 Gene3D - 382 506 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vian2g02508 564 SMART AAA_5 175 322 IPR003593 GO:0016887
Vian2g02508 564 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 344 357 IPR000897 GO:0005525|GO:0006614
Vian2g02508 564 SMART SRP54_3 176 371 IPR000897 GO:0005525|GO:0006614
Vian2g02508 564 NCBIfam signal recognition particle protein 79 503 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vian2g02508 564 Pfam Signal peptide binding domain 402 500 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vian2g02508 564 SMART SRP54_N_2 77 162 IPR013822 GO:0005525|GO:0006614
Vian2g02508 564 Hamap Signal recognition particle 54 kDa protein [srp54]. 81 521 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vian2g02508 564 SUPERFAMILY Signal peptide-binding domain 402 503 IPR036891 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02508 Vian-Chr2 45740031 45746045 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02508 K03106 - gmx:100782581 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02508 2 45740031 45746045 Vian2g02508 2 45740031 45746045 ECH