Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02497 ATGGCGACGAAGAAGTTGATGAAAGCGAGAGCATTGGCAACAGTAAAACCTTCTTCTGCGATCCCCAACCTCCCTCTTCCCTCTCCACCCTCAGACACACCCGTGTCCCAAGTTCACTATGCCCGCTTCCTGGACTTCTTGAAGGCCCATTGGGCCCCGCCGTTCACCCCCGACAGCCTCCTCCACTTCCTAAAATCGAAGCTCCACCACCACCCTTCCTTCTCTCAATTCGACTTCCACCTCTTCACCTGGGCCTCCTCCCTCGACTCATTCCACCACACCCACGCCACGTTCCACTGGATGGCCCGCACCCTTGCCGCCACCCACCGCCTCCCCCAGCTCCGCGCCCTCCTCCACCTCATCGCCACCCACCCCTGCCCCTGCTCTCCCTCCATCTTCTGCTGCCCCCACACCCAACCCATCTTCTCCCACGCCATCCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTCTCCGCATTCCACTCCATGACCAAACTGATCGACTCCAAGCCAGACGTCGCCGTTTTCAACGTCCTCATCCACGCCTTCGTCAAACGCGGTAACCTAAACCAAGCCCTCCAGTTTTACCGCGAGATGGTGGCTACCCACCGCGTTAAGCCTGACGTTTTCACCTTCAACATTTTGATAAGTGGTTACTGTCGGAACTCGCAGTTCGCGTTGGCGTTGGATGTGTTTCAAGAGATGGGGAAAATAGGGTGCGAGCCCAATGTGGTTACTTTCAATACCTTGATCAGGGGAATGTTTAGAGAGGGGAGGGTTGAGGACGCCATTGAGATGGCTCGCGAGATGGTTCAATTAGGGTGTGAGCTTTCGTGTGTTACTTGTGAGATTTTGGTTCAAGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGAGTTTTCTGAAAAGAGGGTTTTGCCTAAGGGGTTTGATTGTTTTGCTTTGGTGGAGGTTTTGTGTGGGCAAGGGTGTGCTGTGAGAGCGTTGGAAGTTGTTTATGAGTTGTGGAATGGGGGGAGTGTTCCGAGTTTGGTTGCTTGTATTGCTGTGGTTGATGGGTTGCGGGGGTTGGGGAAGACCGATGAGGTGCAGAGATTAGTGGAAAGGATGCTTGATGAGGGTATGGTGCTGGATGTTGTGACTTTTAATTATGTTCTTCGGGATATTTGCGATGCACGCAGAACCGATGAGGCGAATAGATTGGTGTTACTTGCTTTGAGCAAGGGTTTGGAACCGGATGACATGACTTATAGGACTTTGGTAATAGGGTATACGGAGGAGGGAAGGAGGGAGAAAGGAGAGTTTCTGGTGAATGAAATGTTGGATAGGGGGTTTATACCTAATCTTGCTTCATATAATAAGTTGATGAGTGGATTGTCTAATTGCAGGCCCTCTACATGCCGTCAAGTAAACAAATTTGATCGATGA 1449 0.5204 MATKKLMKARALATVKPSSAIPNLPLPSPPSDTPVSQVHYARFLDFLKAHWAPPFTPDSLLHFLKSKLHHHPSFSQFDFHLFTWASSLDSFHHTHATFHWMARTLAATHRLPQLRALLHLIATHPCPCSPSIFCCPHTQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPDVAVFNVLIHAFVKRGNLNQALQFYREMVATHRVKPDVFTFNILISGYCRNSQFALALDVFQEMGKIGCEPNVVTFNTLIRGMFREGRVEDAIEMAREMVQLGCELSCVTCEILVQGLCKEGRVLQACELLLEFSEKRVLPKGFDCFALVEVLCGQGCAVRALEVVYELWNGGSVPSLVACIAVVDGLRGLGKTDEVQRLVERMLDEGMVLDVVTFNYVLRDICDARRTDEANRLVLLALSKGLEPDDMTYRTLVIGYTEEGRREKGEFLVNEMLDRGFIPNLASYNKLMSGLSNCRPSTCRQVNKFDR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02497 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vian2g02497 482 NCBIfam pentatricopeptide repeat 423 455 IPR002885 -
Vian2g02497 482 NCBIfam pentatricopeptide repeat 282 314 IPR002885 -
Vian2g02497 482 NCBIfam pentatricopeptide repeat 247 280 IPR002885 -
Vian2g02497 482 NCBIfam pentatricopeptide repeat 212 246 IPR002885 -
Vian2g02497 482 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Vian2g02497 482 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 65 479 - -
Vian2g02497 482 Pfam PPR repeat 282 311 IPR002885 -
Vian2g02497 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vian2g02497 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vian2g02497 482 Pfam PPR repeat 172 202 IPR002885 -
Vian2g02497 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vian2g02497 482 Pfam Pentatricopeptide repeat domain 414 464 IPR002885 -
Vian2g02497 482 SUPERFAMILY HCP-like 160 287 - -
Vian2g02497 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vian2g02497 482 Pfam PPR repeat family 209 255 IPR002885 -
Vian2g02497 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vian2g02497 482 Gene3D Tetratricopeptide repeat domain 134 316 IPR011990 GO:0005515
Vian2g02497 482 Gene3D Tetratricopeptide repeat domain 319 480 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02497 170 479 Glycosyltransferase AT1G05670 24.116 1.84e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02497 - - gmx:100796880 749.199