Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02429 ATGTTTATTAAAAATAAAGGTAGTTTGCTTACTCGGGGGTTGCGCCACTGGGTAAAGAGAAGGAAGGAAAAGGAAGTGAGAGAAAGAAATGGTATAAAATGGTTATTCCAACACGCCTATGCGGTAATGTATAATAACTTTAGTAAAAAGAAAAAAATAAAAATATATTTATTAAAAAAGTTAAAAAGTATTTTTATTTCTGAAAAGAAAAAACGGAGGGAAAAAAATATAGAGTTGCAAGAAGAAAGGTGTGTTAGATCAGACATCAAAGGCTTGCTCATCAAACAAAGCTCGTGTCAGGATGTGATCTATCTCTCGGATAAAATGTATCGGTCCCATCTCCCAGATGCAGAATACAGATTTGAAACAAGTATAAACGTTGAAGGATCTTTAGGCATTTTATTGATAGTTTCTAATCAAAGTATTCCATTCAAACTAAAATCCAGCCAAATCCACCAACCCAAACTCCATATACATGGTCACCATCTGATCCATTTCCAACCAGAGATAATAGTAGAAACGAGCGCAATTCTTGTGCAGGCACTTGAGCGCGTGATGCTCGCGGGCGTTGAAGAGGCGAGTGTCGTAACACCTTTCTCATTTATCACTTTGCGCTATTGTCTATCTAAAAGTTCCCTCTACTATATATTTTTGTTAACCGTTATATTAGGGACGGTAATCAGTTTTCACAAATCACAAAATAAAAGAAAATCAGCTGTCAACTTTTCAGGTTGGTACTCACTCCTTGTTGTTAATTTCGCCGTTAAGTGGTTTCAAATTCGAAACCTAGGTAACCAACATGATAAAATGCTAAAATTTATCTATTTAAAAGTAATCAATTGCATAGCAACTGTATGTGACAACTTTCTTTCACAACAGAAAACTATTAGGCAAACTTCAGAATGGAGTCAGTGTTGTGACTTCCCTTTTATGTCAATTTTTTTGTTTGTGAGCTGTTGTTCATTCATCGATGAACTTAGAGTCATTGAAAACAAAATACATTATAGTTTTCATTTGTACCTTCTTGAGTCATTATACAGGTGTAATGACAGCAGATTGGATTTCAAACAATTTAGAATAGATTCTATGAAACTGTGCTTTACCGTCTCAGTTTATTTTATCTTAGGGTCTATTTTTAGTTCAGTAAACGCCCTTCCGGGGCCCAAGATATTCCTGTTCACAAATCTATTTTACCACGGATTGTATGTCCATGTTGGTGAAGCGACCAATGAATCCTTAATATTAGATTCCATAAACAAGGCTGAGACTTTCTCAACATGCTATCATTCACTCCTGAATTTCTTCAAACATAAAGCCTTTGAGAAGATGCAAAAACAAGTCAGTAAAGATGGGCCTAATAAGTGGGTCAATGTACTTCATAAATTTGCAGGTAGGTCACGAGCAGCAACAGATTGCACTGACTTTAATAGCAGTCACACTGAGCCTAGCAGACCAAATGACGATTCATCAGATATATGGGACATAGAACCTATGAGGAATGGGCCGCAAGGCATTCCAAAGGATATGTTTGCTATGCTTCATCTTTTTTGTGCGACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCCAAATAGAGCAGCAAAGAAAAATTGCATCTATGCTCAATACATTGGTTTATAATGGCTTGTCCCATGTTGGTGGTCATCATAATAAGTCCCTAATGGATTGTGCTATCAGATGCTTACATTTACTGTATGAAAGGGATTGCAGGCACCCATTTTGTCCTCCTGCTTTGTGGCTTTCTCCTGCTAGAAAAAGTCGGCCACCAATTGCTGTAGCTGCCAGAACTCATGAAGTTTTAGCAGCCAACCTGATACATGATGATTATTCATCAGCTTCACTGAGTGTTGGTTCTGTTGTCACTATTGTTCCTCACGTTTTCCCTTTTGAGGAGAGAGTTGAGATATTTCGTGAATTCATCAAGATGGATAAAGCATCTCGAAAAATGGCCGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAATACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCCATCCATGTATCATTTGTTAGTGAATGTGGTCTTCTTGAGGCTGGCCTAGACTATGGTGGGTTATCTAAAGAGTTTCTGACTGACTTATCAAAAGCAGCATTTGCTCCTGAATATGGACTGTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCTTCTGCCAGATATTTGGAGAATGGTCTTCAGATGATTGAATTCCTTGGACGAGTAGTCGGGAAAGCTCTATATGAAGGAATATTACTTGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTTTTGGGACGATATAGTTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAATTATGACGGTGATGTCACGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGGTTGAACTTAAGTCTGGTGGCAAAGATATTTCTGTAACGAACGAGAACAAGATGCAATACATGCATGCAATGGCAGACTACAAACTCAACCAACAGATGTTGCCCTTTTCAAATGCGTTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAGTTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGATGTTGATGATTTGAAAAATAACACTCGATATACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATATTTTGGGAGGTAATTAAAGGATTTGAACCTCAAGAGCGTTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCACTAACCATCCACAAGGTTGCTTGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAGGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACGCTTAAGCTTCCGACATACAAACGTCCAGGAACCTTGAGAGCAAAGCTTCTATATGCTATAAGTTCAAATGCCGGATTTGAACTTTCTTGA 3141 0.3817 MFIKNKGSLLTRGLRHWVKRRKEKEVRERNGIKWLFQHAYAVMYNNFSKKKKIKIYLLKKLKSIFISEKKKRREKNIELQEERCVRSDIKGLLIKQSSCQDVIYLSDKMYRSHLPDAEYRFETSINVEGSLGILLIVSNQSIPFKLKSSQIHQPKLHIHGHHLIHFQPEIIVETSAILVQALERVMLAGVEEASVVTPFSFITLRYCLSKSSLYYIFLLTVILGTVISFHKSQNKRKSAVNFSGWYSLLVVNFAVKWFQIRNLGNQHDKMLKFIYLKVINCIATVCDNFLSQQKTIRQTSEWSQCCDFPFMSIFLFVSCCSFIDELRVIENKIHYSFHLYLLESLYRCNDSRLDFKQFRIDSMKLCFTVSVYFILGSIFSSVNALPGPKIFLFTNLFYHGLYVHVGEATNESLILDSINKAETFSTCYHSLLNFFKHKAFEKMQKQVSKDGPNKWVNVLHKFAGRSRAATDCTDFNSSHTEPSRPNDDSSDIWDIEPMRNGPQGIPKDMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFQIEQQRKIASMLNTLVYNGLSHVGGHHNKSLMDCAIRCLHLLYERDCRHPFCPPALWLSPARKSRPPIAVAARTHEVLAANLIHDDYSSASLSVGSVVTIVPHVFPFEERVEIFREFIKMDKASRKMAGEISEPGSRAIEIVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFAPEYGLFSQTSTSDRLLIPTASARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVTELCLDFTVTEESLGKRYVVELKSGGKDISVTNENKMQYMHAMADYKLNQQMLPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPQERCMLLKFVTSCSRAPLLGFKYLQPPLTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02429 1046 MobiDBLite consensus disorder prediction 471 492 - -
Vian2g02429 1046 FunFam Putative Ubiquitin-protein ligase E3C 804 883 - -
Vian2g02429 1046 Gene3D Hect, E3 ligase catalytic domain 804 883 - -
Vian2g02429 1046 CDD HECTc 678 1044 IPR000569 GO:0004842
Vian2g02429 1046 ProSiteProfiles HECT domain profile. 702 1046 IPR000569 GO:0004842
Vian2g02429 1046 SUPERFAMILY Hect, E3 ligase catalytic domain 678 1039 IPR035983 GO:0004842
Vian2g02429 1046 FunFam E3 ubiquitin-protein ligase UPL7 921 1045 - -
Vian2g02429 1046 Gene3D Hect, E3 ligase catalytic domains 680 918 - -
Vian2g02429 1046 Pfam HECT-domain (ubiquitin-transferase) 733 1046 IPR000569 GO:0004842
Vian2g02429 1046 Gene3D Hect, E3 ligase catalytic domain 921 1045 - -
Vian2g02429 1046 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 316 1046 IPR044611 GO:0000209|GO:0061630
Vian2g02429 1046 SMART hect_3 696 1046 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02429 Vian-Chr2 44774075 44790296 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02429 K10588 - gmx:100527169 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02429 2 44774075 44790296 Vian2g02429 2 44774075 44790296 ECH