Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02402 ATGGTGAAGGCCTACCTCCGATTCGAGGCGGCAGCGTCGTTTGGAGTGATAGCCTCGGTGGATTCCAACATATCATACGACAGCTCCGGCAAGAACCTTCTCTCTCCGGCACTCGAGAAGATAGGCGTTTGGAACGTGCGGCAGGGCCTCTGCACCAAAACCCTAACACCTTCTACCGCGTCTCTTGGTCCTTCCCTCGCCGTCACCTCCATTGCCTCCTCTCCTTCCTCATTGATTGCTGGTGGTTACGGGGATGGTAGCATACGGATTTGGGACTCTGATAAAGGAGCGTGTGAGACTACGCTAAATGGTCACAAGGGAGCTGTCACCGCTCTTCGTTACAACAAGGCTGGTTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTATGGGACGTGGTGGGCGAGACTGGGCTCTTTCGCCTTCGTGGTCATCGTGACCAGGTGACTGATGTTGTTTTTTTGAATTCTGGGAAAAAACTTGTGAGTTCCTCCAAAGACAAATTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTGGGTGGACATCATAGTGAAATATGGTCCCTGGATGTTGATCTAGATGAAAGGTATCTGGTCACTGGTTCTGCAGATAGTGAACTTCATTTTTATGTAATCAGACATGAGTCTGTGGATGGGAACTCTTTAAATGGGGTTGAAGAATCCTCCATTCAAAGCAAATGGGAAGTGCTGAGGCATTTTGGTGAAATTCAGCGACAAAGTAAGGAAAGGGTTGCAACTGTGCAGTTCAACAAGTCTGGAAACCTGCTAGCTTGCCAAGTTGCCGGTAAAACTGTAGAAATATATCGTGTATTGGATGATGCTGAAGCAAAGCGCAAGGCAAAGCGAAGGGTTCACCGAAAGAAAGAGAAGAAACACAATAACTCTTCTGTCACTCTTGTGCCCACAAAAACAACTAACCCTGAATTTACTGTGCCTGATGTTTTCAAGCTGTTGCATACTATTAGAGCTAACAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCAAAAAATTCATTGGCTAGTTTAGCATTGTCTCTGAACAATAATCTTCTTGAGTTTTACTCCATTGAACTTGGTGAAACCAGAAAAACACTTGCTATTGATCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAATTACTGGCGCTTGCCTAAGAACCATTGATTCTGGGTATGGACTGTGCAGTTTAATTCTTCCCACTAACAAGTATGGGCTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGCGGCACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCTCAATTGCTGCCCTACCTCATAAAAGTGGTTTTGTCACTGGAAGTGCTGATCATGATGTCAAATTTTGGGAGTACCAGTTGAAGCAAAAACCTGGTCAAGCTACTAAGCAACTCGTAGTGTCAAATGTCAGTACCATGAAAATGAATGATGACGCCCTTGTTGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTATTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTTTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGCTCTGCAGATAAAAATTTAAAGATCTGGGGTTTAGACTTTGGTGACTGTCATAAATCCATTTTTGCGCATGCTGACAGTGTTATGGCCGTACAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCTGATAAATTTGAGCTGCTGTTGACTCTAGAAGGACATCATGCAGATATTTGGTGTCTTGCAGTCAGTAATCGTGGGGATTTCATTGTCACTGGATCTCATGATCGTTCCATCCGACGCTGGGATCGCACTGAAGAGCAGTTTTTCATAGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGACGCTGATCTCGACAATGCATTTGAAAAGAAGTATGCATCAATGGAAGAAATACCAGAGGAGGGAGCCGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTACTGCAACTGACTTAATTATTGAAAGATTAGACATCGCAGAAGCTGAAAAAAAGCGCATTGCAGAACATCAGGAGGATAAAAATAACAGAAATGTTGCTGTTTTCCAATCAAATCCGCTTATGAACGGGCTTTCACCTTCTGATTATGTTTTAAGTGCATTTTCAAATGTTCACACCAATGATTTGGAGCAAACATTACTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTCTCGTACTTGAAAGACTGGACTTCATATTCTGATAAGGTTGAGCTTGTTTGCAGAGTAGGTACGCTGCTGTTGCAGACACATTATAACCAGCTTCTTGCCACACCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGGATGGAAGGATATCTTTGGGTTTAACCTCGCAGCCATGGATCATATTCAGCAATTGATGGCATCTAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTACTCGACAATCTAAACGTTTAGAAGAAAGGTCACACACTGGAGAAGTTCGATCACCAGAAAGGCGTATGACCTTGTCAAAACGGTACATTTTTCCAGATTGTTGA 2811 0.4283 MVKAYLRFEAAASFGVIASVDSNISYDSSGKNLLSPALEKIGVWNVRQGLCTKTLTPSTASLGPSLAVTSIASSPSSLIAGGYGDGSIRIWDSDKGACETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLNSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADSELHFYVIRHESVDGNSLNGVEESSIQSKWEVLRHFGEIQRQSKERVATVQFNKSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHNNSSVTLVPTKTTNPEFTVPDVFKLLHTIRANKKICSISFCPITPKNSLASLALSLNNNLLEFYSIELGETRKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPITGACLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKSGFVTGSADHDVKFWEYQLKQKPGQATKQLVVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFDADLDNAFEKKYASMEEIPEEGAVALAGKQTQETLTATDLIIERLDIAEAEKKRIAEHQEDKNNRNVAVFQSNPLMNGLSPSDYVLSAFSNVHTNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRVGTLLLQTHYNQLLATPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQLMASRSDALFHDARSKLLEIRTRQSKRLEERSHTGEVRSPERRMTLSKRYIFPDC 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 677 - -
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 635 - -
Vian2g02402 936 SMART WD40_4 48 92 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 459 498 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 638 677 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 513 551 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 554 593 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 137 176 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 419 456 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 179 218 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 378 416 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 240 283 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 95 134 IPR001680 GO:0005515
Vian2g02402 936 SMART WD40_4 596 635 IPR001680 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 498 IPR001680 GO:0005515
Vian2g02402 936 Gene3D - 551 728 IPR015943 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Vian2g02402 936 SUPERFAMILY WD40 repeat-like 338 679 IPR036322 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 466 498 - -
Vian2g02402 936 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 385 416 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 97 134 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 64 92 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 181 216 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 640 677 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 559 592 IPR001680 GO:0005515
Vian2g02402 936 Pfam WD domain, G-beta repeat 460 497 IPR001680 GO:0005515
Vian2g02402 936 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Vian2g02402 936 PRINTS G protein beta WD-40 repeat signature 580 594 IPR020472 -
Vian2g02402 936 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Vian2g02402 936 Gene3D - 328 550 IPR015943 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 602 IPR001680 GO:0005515
Vian2g02402 936 Pfam Dip2/Utp12 Family 780 880 IPR007148 -
Vian2g02402 936 Coils Coil 285 305 - -
Vian2g02402 936 CDD WD40 385 677 - -
Vian2g02402 936 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Vian2g02402 936 FunFam WD repeat-containing protein 3 isoform A 631 689 - -
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 595 - -
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Vian2g02402 936 CDD WD40 98 498 - -
Vian2g02402 936 Gene3D - 15 327 IPR015943 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Vian2g02402 936 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 425 IPR001680 GO:0005515
Vian2g02402 936 SUPERFAMILY WD40 repeat-like 39 357 IPR036322 GO:0005515
Vian2g02402 936 FunFam Transducin family protein / WD-40 repeat family protein 318 429 - -
Vian2g02402 936 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 4 917 - -
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 217 IPR001680 GO:0005515
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 644 IPR001680 GO:0005515
Vian2g02402 936 MobiDBLite consensus disorder prediction 293 315 - -
Vian2g02402 936 FunFam WD repeat domain 3 430 622 - -
Vian2g02402 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 677 IPR001680 GO:0005515
Vian2g02402 936 FunFam Transducin family protein / WD-40 repeat family protein 60 317 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02402 558 686 Miscellaneous Gene Families AT5G08390 27.132 1.20e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02402 K14556 - gmx:100775810 1659.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02402 2 44485103 44495025 Vian2g02402 2 44485103 44495025 ECH