Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02397 ATGGCAGCAACCTCAACATCACTGGCTTCTCAACTCTACATTGGCCTGCGCCGCCCCTGCCCCAAGCTCGATTCTTTCAATTCTCCGTCTTTTTCTGCCTTCGACCCTAATCTTCGCCTCTCCCTCTCTCCTCCCAAACCCTCACGCGCCGTTGTCGCCATGGCCGGCTCTGGCAAGTTCTTCGTTGGGGGCAACTGGAAGTGTAACGGAACAAAAGATTCCATCAGTAAGCTTGTCGCTGACTTGAACAGTGCAAAATTGGAGCCCGATGTTGATGTCGTTGTTGCACCTCCCTTTCTGTACATCGATCAAGTGAAAAGCTCACTTACAGACCGGATTGAAATATCTGCCCAGAATTCTTGGGTTGGTAAAGGTGGTGCTTTCACTGGAGAAATCAGTGCTGAACAAGTGAAAGATATTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGTTTATAGGAAAGAAAGCTGCCTATGCTTTGAACCAGGGTCTTGGAGTGATTGCATGCATAGGAGAATTGTTAGAAGAAAGGGAAGCAGGGAGAACTTTTGATGTTTGCTTTCAACAATTGAAGGCTTATGCTGATGCTGTTCCTAGTTGGGACAATATTGTTATTGCATATGAACCTGTATGGGCCATTGGAACTGGCAAAGTGGCCACTCCCCAGCAGGCTCAGGAAGTACATGTAGCTCTTCGGGATTGGCTGAAAAAGAATGTCTCAGATGAAGTTGCATCTAAAACACGAATTATTTATGGAGGGTCTGTAAATGGAGGGAACAGTGCTGAGCTGGCAAAGCAAGAGGATATCGATGGATTTCTCGTTGGAGGTGCTTCATTGAAGGGTCCTGAGTTTGCTACCATTGTGAATTCAGTCACATCCAAGAAAGTTGCGGCTTGA 930 0.4634 MAATSTSLASQLYIGLRRPCPKLDSFNSPSFSAFDPNLRLSLSPPKPSRAVVAMAGSGKFFVGGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFLYIDQVKSSLTDRIEISAQNSWVGKGGAFTGEISAEQVKDIGCKWVVLGHSERRHIIGENDEFIGKKAAYALNQGLGVIACIGELLEEREAGRTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHVALRDWLKKNVSDEVASKTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02397 309 Hamap Triosephosphate isomerase [tpiA]. 58 301 IPR022896 GO:0004807|GO:0006096
Vian2g02397 309 Pfam Triosephosphate isomerase 61 301 IPR000652 GO:0004807
Vian2g02397 309 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 59 301 IPR000652 GO:0004807
Vian2g02397 309 CDD TIM 60 300 IPR000652 GO:0004807
Vian2g02397 309 NCBIfam triose-phosphate isomerase 61 291 IPR000652 GO:0004807
Vian2g02397 309 ProSitePatterns Triosephosphate isomerase active site. 217 227 IPR020861 GO:0004807
Vian2g02397 309 PANTHER TRIOSEPHOSPHATE ISOMERASE 55 301 IPR000652 GO:0004807
Vian2g02397 309 Gene3D Aldolase class I 45 308 IPR013785 -
Vian2g02397 309 FunFam Triosephosphate isomerase 54 303 - -
Vian2g02397 309 SUPERFAMILY Triosephosphate isomerase (TIM) 57 302 IPR035990 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02397 Vian-Chr2 44430958 44434493 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02397 K01803 - gmx:100819824 594.734