Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02393 ATGTTTAAGCGAATCATGAAGGGAGGGCAGAAGAAGCCCTCTAAGACGGACCCGAGCGATCCGTCCTCCTTCGGTCCGCCGGTGACGGCCGCTACTCCGGAGGTGGTGGTGCCGCCGCCTACGGGGACCATAGAGCCGCTGCCGCTGTTCCGCGACGTGCCTGTGTCGGAGCGGCAGACCCTGTTCATTCGGAAGCTTCAGATATGCTGCCACGTGCTGGACTTCTCGGACACGCTGAAGAGCATTCGTGAGAAGGAAATCAAGAGGCAGACGCTGATGGAGCTCGTGGATTTCATACAATCGGGTTCGGGGAAGATAACGGAGACTTGCCAGGAGGAGATGATCAAAATGGTGTCCGTCAATATCTTCCGGTGCCTCCCGCCGGCGTCGCACGAGAACACCGGCCAGGAACCCACCGATCCGGAGGAAGAGGAGCCGTGCCTCGATCCCGCGTGGCCGCACCTTCAGCTTGTCTACGAGCTGCTCCTCAGATACATCGTTTCCTCTGATACTGACACAAAGGTTGCGAAACGGTACATAGATCATTCTTTTGTCCTCAAACTGCTTGATTTGTTTGACTCTGAGGACCCCCGTGAGCGTGAGTACTTAAAAACCATATTACATCGCGTGTACGGGAAATTCATGGTTCATCGCCCCTTTATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACGGAGCGGCATAGCGGTATTGGGGAGCTTCTTGAGATTCTGGGGAGCATTATCAATGGGTTTGCTCTGCCGATGAAAGAAGAACATAAGCTGTTTCTATCTAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTGCGGTGTATCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTTCAAGCTCGCGGATGCAGTTATTAGGGGCTTGTTGAAGTATTGGCCCGTAACTAATTGCCAGAAGGAGGTTCTCTTTCTTGGGGAACTGGAGGAGGTGCTGGAGGCCACGCAAGCTGCGGAATTCCAGCGCTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTCGTGTGGATTTGTTTTTCATCACCTTTGCTGATGCAATCCTTTTTTCAACATTACCTTTGGGTAGCCGGGTTGCAGAACGAACTCTCTTTTTGTGGAATAATGAGCACATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTCGAAGCATTGGAGAAAAATATCCAGAGTCATTGGAACCAGGCTGTTCACGGACTGACCGTGAACGTTCAGAAAATGTTCATAGAAATGGATGCAGAATTATTTGAAGAATGTCAGAGACAGTATGCAGAGAGGGAGTCTAAAGCAAAAGATTTAGAAGAGCAGCGGGAATTGAATTGGAAAAGACTGACAGATGCAGCTGCACAGAATGGGGTGGATATGGTCACAGCTTAG 1479 0.501 MFKRIMKGGQKKPSKTDPSDPSSFGPPVTAATPEVVVPPPTGTIEPLPLFRDVPVSERQTLFIRKLQICCHVLDFSDTLKSIREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSVNIFRCLPPASHENTGQEPTDPEEEEPCLDPAWPHLQLVYELLLRYIVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLSRALLPLHKPKPVAVYHQQLSYCIAQFVEKDFKLADAVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQVARCLNSSHFQVRVDLFFITFADAILFSTLPLGSRVAERTLFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIQSHWNQAVHGLTVNVQKMFIEMDAELFEECQRQYAERESKAKDLEEQRELNWKRLTDAAAQNGVDMVTA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02393 492 Gene3D - 54 481 IPR011989 -
Vian2g02393 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 36 486 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian2g02393 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 47 364 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian2g02393 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 386 482 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian2g02393 492 Coils Coil 450 470 - -
Vian2g02393 492 PIRSF PP2A_B56 22 377 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian2g02393 492 PIRSF PP2A_B56 379 490 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian2g02393 492 MobiDBLite consensus disorder prediction 1 39 - -
Vian2g02393 492 SUPERFAMILY ARM repeat 59 464 IPR016024 -
Vian2g02393 492 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 54 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02393 Vian-Chr2 44399548 44404269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02393 K11584 - gmx:100798308 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02393 2 44399548 44404269 Vian2g02393 2 44399548 44404269 ECH
Vian2g02393 2 44399548 44404269 Vian3g02058 3 26398089 26404270 PCT