Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02378 ATGGGAGAGAAAAAAGAGAAGGCGAAGAATGAGGCCGGTAATACGCCTGACTCGGGAGGAAAGCAAAACGACGTACTCGCCCCTGTCGTTTTGAGACTCGAAATGCATTGCGAGGGATGCGTAAAAAAGATCAAACGCGCCGTTCGCAATTTCGACGGTGTGGAAGACGTTAAGGCTGATCTACAAGGTAACAAGTTAACGGTTTTTGGGAAGATCGACTCTGCCGTAGTGCGAGATAAACTAGCGGACAAGACTAGGAAGAAGGTAGAAATTATTTCTCCTCAACCGAAGAAAGATTCCGGCGCCGCCAGTAAACCACCGGAGAAAAAGGTGGAAGAGAAAAAAGCTGAAGAGAAGAAACCGGCAGATAAGAAAACCGAAGAAAAAACCCCGAAACAGAGCACGGTGGTGTTGAAGGTCCGATTGCACTGTGACGGTTGCATTCAGAAAATTCGAAAGATTATTCTCAAGATCAAAGGGGTTGAATCGGTTAAAATAGAGGGAGGGAAAGACTTGGTGACGGTAAGTGGCACAGTGGAGTTGAAGGAATTGGTAGCGTATCTGAACGAGAAGCTGAAGCGGAACGTTGAGGTGGTCCCGCTGAAGAAAGAGGGTGAAAAGAAGGGGAAGGAGAAGGAGAAGGGGAAGGAGAAGGGGAAGGAGAAGAAAGAAGGTGGCGGTGGTGCTAAGAAAGATAGTGGAGAAAAAGAAGAGGGTGTACCGAAGGTTGAGGTTAACAAAATGGAGCACTACGGGCACGTTTACCCACCTCCTCCTATGTACTGGTACGACGGATATGCACCAGGTCAAAGTAGTACTAGTGGTGGTGGTGGCGGCTACACGGTGGGGGTTCATTCAGGGTATGATGGTAATTACGGGAATTACCATGACCAATACCATAATGGGTATGGGAACCAAGGGTACATGGTACAGCAACCACCCCAACCCCCGTTCTACTTGAACCCTTATCATCCTCCACCGCAGATGTTCAGTGATGAGAACCCCAATGCTTGTTTCGTGATGTGA 1026 0.4825 MGEKKEKAKNEAGNTPDSGGKQNDVLAPVVLRLEMHCEGCVKKIKRAVRNFDGVEDVKADLQGNKLTVFGKIDSAVVRDKLADKTRKKVEIISPQPKKDSGAASKPPEKKVEEKKAEEKKPADKKTEEKTPKQSTVVLKVRLHCDGCIQKIRKIILKIKGVESVKIEGGKDLVTVSGTVELKELVAYLNEKLKRNVEVVPLKKEGEKKGKEKEKGKEKGKEKKEGGGGAKKDSGEKEEGVPKVEVNKMEHYGHVYPPPPMYWYDGYAPGQSSTSGGGGGYTVGVHSGYDGNYGNYHDQYHNGYGNQGYMVQQPPQPPFYLNPYHPPPQMFSDENPNACFVM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02378 341 CDD HMA 35 87 IPR006121 GO:0046872
Vian2g02378 341 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 4 341 IPR044594 GO:0046872
Vian2g02378 341 Pfam Heavy-metal-associated domain 138 196 IPR006121 GO:0046872
Vian2g02378 341 Pfam Heavy-metal-associated domain 31 84 IPR006121 GO:0046872
Vian2g02378 341 Gene3D - 26 99 - -
Vian2g02378 341 Gene3D - 132 205 - -
Vian2g02378 341 MobiDBLite consensus disorder prediction 205 243 - -
Vian2g02378 341 MobiDBLite consensus disorder prediction 87 133 - -
Vian2g02378 341 SUPERFAMILY HMA, heavy metal-associated domain 30 83 IPR036163 GO:0046872
Vian2g02378 341 SUPERFAMILY HMA, heavy metal-associated domain 133 194 IPR036163 GO:0046872
Vian2g02378 341 MobiDBLite consensus disorder prediction 102 133 - -
Vian2g02378 341 ProSiteProfiles Heavy-metal-associated domain profile. 26 89 IPR006121 GO:0046872
Vian2g02378 341 ProSiteProfiles Heavy-metal-associated domain profile. 133 213 IPR006121 GO:0046872
Vian2g02378 341 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02378 Vian-Chr2 44185225 44186827 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02378 - - pvu:PHAVU_001G179100g 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02378 2 44185225 44186827 Vian2g02378 2 44185225 44186827 ECH