Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02326 ATGAGAGATTTCGTGATCCTTGGCTCCTCTGTCACAACCCCTTTTCCTTCTTCTTCTTCTGCAGCACCCTATCGCTTCTCCATTAAACACTCTATTCCAAAGCTCGCTCCTTTCTATTCCTCTTGGAACATTTCATGCGCCCTCCAAGCCCCCCTCTCTCTCAGCGCCGATTCCAAGCTCGTTGAGGAATTTGAAGTGTTCGATGAGGATGCCATTGATTCTGGGGTCGATGCTGAGGTTCTGGCCAAGATGGTTCTGTTGGGAATTCGAGGGAACAAGGTAAGGAGTGTTGTTCACACTCTCAACAGAGTGCAGGATCGCGCAGTTTCTCTAGCTTCTCATCTTAATGGCTCTTCGATTGATGCCATTGCGAAGGAGTGTTGCCGTTTGCTCACGTGCGGCCAAATTGAGGAGGCTGTTGAACTAATGGAGATTCTCACACGTTTCAAGATATCAATCAGGGGACTTGTTCAGCCGTCTGACGTAATTAAACGCTGTGTTCTTAGTCGGAAACCAATTTTAGCTGTTAGGTATGCATGTCTTCTTCCCCATGCACAGATATTGTTCTGCAGTATTATATCAGAATTTGGCAAAAGGAGGGATTTGATTTCTGCTTTGAAAACATATGAGCTATCGAAGAAACATGTGGATACTCCCAATATGTACATATACCGGGCAATAATTGATGCTTGTGGTCTATGTCGTGATTACATGAAATCTAGGTATGCAATGACAATGGGAGAGAGATTATCTCCTCAGGCTAGGGATACAGAAACTGATTTGCTTAATCAGAAGATCACTCCAAATATATACGTTTTCAACAGCCTCATGAATGTGAATGCTCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGGTCTTCGCAGATGCGAGGTTATGGCAGATGGCTCTAACAATCAAGCAAGACATGCTTTCTGCTGGTGTTTCTCTTAATATTGTCGCATGGTCATCATTAATCAATGCCTGTGCACATACAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGCGAGCCTAATACTCAGTGTTTCAACATCATTTTAAATGCCTGTGTTGAAGCTTGCCAATATGACAGGGCTTTTCGCTTTTTCAATTCTTGGAAGGGAAAAAAGATGTCAAGGTCATTTGGTGAAGACTGCAACAACAATATAAGACCGGGACTTGTGCATAATGTTACTACTATGCCAAATGGCATTTCTAATTCACACATCTTGAATTTTGCTGAGAGGTTCCCTTTCACACCAACTACAACAACATACAATATTTTACTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGCCTTTCCCCTAATCAAATTAGCTGGTCAATTTTGATAGATATCTGTGGAGCATCAGCAAACGTGGAGGGTGCCATTGAGATTTTGAAGAACATGGCTGATGCTGGAATTAAACCTGATGTTATTGCATATACGACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAGCATTATATGAAGAAATGAAAAGCTACCAGATAAGACCAAATTTGATAACATACAACACACTTCTGAAGGCCCGCAGTAAATATGGCTCCCTACATGAGGTGCAACAATGCTTGGCTATATACCAGGATATGCGAAAGGCAGGGTATGTTAGCTTTACTCACGAACTGGAATCCCTCGTTGTCCAAGGAAGAAGAGGGAATTCTGATTCTAATTCTTTACTTCCATTGTCATCCTGGTATAAACCCAATGACTGCTATCTGGAAGAATTGATTGAGGAATGGTGTGAAGGAGTGATACAAGATAACAGAGAGATGCAAGGAGAATTTTCTTTCAGCAATAAATCTGAATTAGAGAGATCCCAAAGTCTACTTCTTGAAAAAATTGCTGCTCACCTGCTAAAGAGGGTAGCTGACATCCTATCAATTGATGTTCAAGGTCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGTATGATCAAAGAGAATTACAGTTTAGGACATTCAATAAATGATGATATCTTGATCGTCATAGGAGCTACTAAAGTAGACGAAAATCCAAATAAACGCATATTAGAAGTGCAAGAGGCAATAATAAAACTTCTTAGAAACGAATTGGGGCTGGAAGTTTTTTCTGCCAGAACCAGATTAGCACTAAGTGACACACCAAAGTTAAAGCACCCCAACTTTGCAAATCTCAAAATAGGAGCACTACCAGGAGAGGATGCATTACCCACATTAACGGGGTTTCAGACCAGGAGACCTGCAATTCTAGTGAGGTTGAAGGTCACCAGAAAATCATTATACAGTTGGTTGCACAGGAAGTAA 2400 0.41 MRDFVILGSSVTTPFPSSSSAAPYRFSIKHSIPKLAPFYSSWNISCALQAPLSLSADSKLVEEFEVFDEDAIDSGVDAEVLAKMVLLGIRGNKVRSVVHTLNRVQDRAVSLASHLNGSSIDAIAKECCRLLTCGQIEEAVELMEILTRFKISIRGLVQPSDVIKRCVLSRKPILAVRYACLLPHAQILFCSIISEFGKRRDLISALKTYELSKKHVDTPNMYIYRAIIDACGLCRDYMKSRYAMTMGERLSPQARDTETDLLNQKITPNIYVFNSLMNVNAHDLSYTLNLYQNMQVFADARLWQMALTIKQDMLSAGVSLNIVAWSSLINACAHTGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEACQYDRAFRFFNSWKGKKMSRSFGEDCNNNIRPGLVHNVTTMPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASANVEGAIEILKNMADAGIKPDVIAYTTAIKVCVESKNFMQALALYEEMKSYQIRPNLITYNTLLKARSKYGSLHEVQQCLAIYQDMRKAGYVSFTHELESLVVQGRRGNSDSNSLLPLSSWYKPNDCYLEELIEEWCEGVIQDNREMQGEFSFSNKSELERSQSLLLEKIAAHLLKRVADILSIDVQGLTKVEARLVVLAVLRMIKENYSLGHSINDDILIVIGATKVDENPNKRILEVQEAIIKLLRNELGLEVFSARTRLALSDTPKLKHPNFANLKIGALPGEDALPTLTGFQTRRPAILVRLKVTRKSLYSWLHRK 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02326 799 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 426 569 - -
Vian2g02326 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Vian2g02326 799 Pfam Pentatricopeptide repeat domain 488 545 IPR002885 -
Vian2g02326 799 Pfam PPR repeat family 321 368 IPR002885 -
Vian2g02326 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Vian2g02326 799 Gene3D Tetratricopeptide repeat domain 184 403 IPR011990 GO:0005515
Vian2g02326 799 Gene3D Tetratricopeptide repeat domain 418 593 IPR011990 GO:0005515
Vian2g02326 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Vian2g02326 799 NCBIfam pentatricopeptide repeat 503 535 IPR002885 -
Vian2g02326 799 NCBIfam pentatricopeptide repeat 467 501 IPR002885 -
Vian2g02326 799 NCBIfam pentatricopeptide repeat 323 357 IPR002885 -
Vian2g02326 799 NCBIfam pentatricopeptide repeat 359 388 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02326 336 629 Glycosyltransferase AT1G05670 23.026 1.33e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02326 - - gmx:100794606 1146.72