Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02311 ATGCCTCGCCATGATGATAAATACAATACACGCCTGTACGTGGGACGCTTGTCTCACAATACCCGTTCCCGTGATCTGGAGCGTGCTTTCAGCAGATATGGAAGTGATAGGTTGCCGTCCGGCTGTCGACCTTGTTTTGTGCTGAAACATGGTGATACGCAGGTTTCTGTGGTTTTCTCTAAACCTGGAGGTCTGTGTTGGGAGGTTGGCCTTGGTGGAATTGATGGAAATTCCTGTCGAGTGTTGACTTTGGCGATTCTTTCTTTAAGTAATGATGGCCTTACTGTTTCTGGAAACCATTTCCGCAGAGTTCGAGGTGTGGATATGAAGAACGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGATGATGCCAGATTTAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCCAAGGGGGGTCCTCGAGGTTCCCGTGAATACTTGGGTAGGGGTCCACCACCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCAGAGATTGCAAAGCTGGGGATTGGAAAAACAAATGCTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGCAGTAGGCGTGGGCGGAGTTTCTCACGATCACCAGTCAGGTCATATTCTCCTCGTCGTGGGAGAAGCAGGGATCGGAGCTACAGTCGTGACCGGAGCTACAGTCGATCGAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTCTCTGAAGATAGGTCACATAGTCCTCGACCCTCCAAGATAAGGGATCATAGTGCATCACCTGACCGTGGCAGCCCACAGAAGAAAAGTGACATATCTCCCCGTAATGATGATAGGTTGGTCACACAGCGAGATGGGTCTGACTTCAGTGATGGTCCAAGAGGTAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGAACAACAATGAGAGGGGGTATGATAGCCCAAAATCTAATGGTCGTAGCCGGAGCCCCAGCCGCAGCCCTAGGGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGTCGCTCACAGTCACCACCTTAG 1101 0.4968 MPRHDDKYNTRLYVGRLSHNTRSRDLERAFSRYGSDRLPSGCRPCFVLKHGDTQVSVVFSKPGGLCWEVGLGGIDGNSCRVLTLAILSLSNDGLTVSGNHFRRVRGVDMKNDFAFVEFSDPRDADDARFNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRRGRSFSRSPVRSYSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSHSPRPSKIRDHSASPDRGSPQKKSDISPRNDDRLVTQRDGSDFSDGPRGKSRSPASPARNNNERGYDSPKSNGRSRSPSRSPRDDRSPIDEDDDNHRRSQSPP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02311 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 148 IPR000504 GO:0003723
Vian2g02311 366 SUPERFAMILY RNA-binding domain, RBD 101 167 IPR035979 GO:0003676
Vian2g02311 366 ProSiteProfiles Zinc finger CCHC-type profile. 189 205 IPR001878 GO:0003676|GO:0008270
Vian2g02311 366 Pfam Zinc knuckle 188 205 IPR001878 GO:0003676|GO:0008270
Vian2g02311 366 Pfam Zinc knuckle 167 182 IPR001878 GO:0003676|GO:0008270
Vian2g02311 366 ProSiteProfiles Zinc finger CCHC-type profile. 167 182 IPR001878 GO:0003676|GO:0008270
Vian2g02311 366 MobiDBLite consensus disorder prediction 317 339 - -
Vian2g02311 366 SMART rrm1_1 11 144 IPR000504 GO:0003723
Vian2g02311 366 MobiDBLite consensus disorder prediction 340 366 - -
Vian2g02311 366 SUPERFAMILY Retrovirus zinc finger-like domains 158 206 IPR036875 GO:0003676|GO:0008270
Vian2g02311 366 Gene3D - 2 155 IPR012677 -
Vian2g02311 366 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 158 186 - -
Vian2g02311 366 Gene3D - 187 217 - -
Vian2g02311 366 Gene3D - 158 186 - -
Vian2g02311 366 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Vian2g02311 366 SMART c2hcfinal6 189 205 IPR001878 GO:0003676|GO:0008270
Vian2g02311 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 141 IPR000504 GO:0003723
Vian2g02311 366 FunFam Serine/arginine-rich splicing factor RS2Z32 187 235 - -
Vian2g02311 366 MobiDBLite consensus disorder prediction 201 366 - -
Vian2g02311 366 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 10 246 - -
Vian2g02311 366 MobiDBLite consensus disorder prediction 228 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02311 Vian-Chr2 43506907 43509574 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02311 K12896 - gmx:100813237 381.719