Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02302 ATGGATCGTCGTTATCACCTTCGCCGACTCCACCATCCACGCGACCCTCTCTCCGAACCCACCACTCCCACCCCCTCCACCACTCCGAGCTCCACCTTCTTCCTCTCTGCCTCTGGAAAGGCCCTCCTTCTCTCCAACTCCAACAAGCGCCCCGACACACCCCGCAAGAAGTATGTCAAGCAGGTCACGGGCCGCAACAACGACACCGAGCTCCACCTCGCCGCTCAGCGTGGAGACGTGGCCGCCGTCCGCCAAATCATCGACGAGATCGACTCCGTCTTAATGGGGACCTTCGAGTTTGACGCCGAGGTTGCCCACATCAAGTACGCCATCTTCAACGAGGTCAACGACCTCGGCGAAACAGCTCTCTTCACCGCCGCGGAAAAGGGACACCTCGACGTCGTCCGCGAGCTCCTCCCTCACTCCACCGCCGAATCCCTTTCCTCCAAAAACCGCTCCGGCTTTGACACTTTGCACATCGCCGCTAGCAAAGGTCATCTTGCGATTGTGCAGGTGCTACTAGAGCATGACCCTGGGTTGATCAAAACGTTTGCTCAGTCAAATACAACGCCTCTAATCTCTGCAGCTACACGAGGGCACTCGGATGTTGTTGAAGAGTTGTTGTCTCGTGATCCTACTCAGTTGGAGATGACAAGGGCCAATGGAAAGAATGCTCTCCATTTAGCCGCACGGCAGGGGCATGTGGATGTTGTGAAGATACTGCTGCAGAAGGATCCACAACTTGCTCGAAGAACTGATAAGAAAGGACAAACTGCACTGCACATGGCTGTCAAAGGGATTAGTTGTGATGTGGTAAAGCTCATTTTGGTTGCCGATGCAGCCATTGTCATGCTCCCTGACAAGTTTGGCAACACTGCATTGCATGTAGCCACGAGGAAGAAGAGGGCAGAGATAGTGCAAGAGCTATTACTTCTTCCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCGCTAGACCTTGCGGAGGGGCTTCCAATAACTGAAGAAATTCTGGAGATCAAAGAGTGTCTGATTCGTTATGGCGCAGTTAAAGCCAATGATCTCAACCAACCAAGGGATGAGCTGAGGAAAACCATGACACAGATCAAGAAAGATGTCTATTTTCAGCTGGAACAGACTCGAAAAACAAACAGGAATGTGAGTGGAATTGAAAATGAGCTACGCAAGTTGCACAGGGCTGGAGTCAACAATGCTGGGAACTCAGTAACGGTGGTTGCTGTGCTATTTGCTGCGGTTGCATTCGCAGCACTTTTCACAGTTCCTGGTGGGGATTATGATAATGGGATGGCAGTGATGGTACATACTGCACCGTTCAAGGCTTTCTTCATATCTAATGCCTTGGCACTGTTTACATCATTGGCAGTGGTGTTGGTTCAAATCACCATTGTTAGAGGGGAGGTAAAGGCTGAGAGAAAGGTTGTGGAGGTAATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATACATTACAGCTTCTTATATAGTAGTTGGTCGGCGCAGCAAGTGGGCTGCCATACTTGTTACAGTTATAGGGGGGATCATAATGGGCGGTGTTCTGGGTACCATGACATACTATGTGGTCAAATCCAAACGCTCCCGAAGAGAGAGGAAGAAAGAGAAGAAGTCTAAGAAAGAAGGAACGTTGCGTCTTTCAAATTCTGATGAGTCAGAAATAAATCCAATCTATGCCATTTGA 1737 0.4986 MDRRYHLRRLHHPRDPLSEPTTPTPSTTPSSTFFLSASGKALLLSNSNKRPDTPRKKYVKQVTGRNNDTELHLAAQRGDVAAVRQIIDEIDSVLMGTFEFDAEVAHIKYAIFNEVNDLGETALFTAAEKGHLDVVRELLPHSTAESLSSKNRSGFDTLHIAASKGHLAIVQVLLEHDPGLIKTFAQSNTTPLISAATRGHSDVVEELLSRDPTQLEMTRANGKNALHLAARQGHVDVVKILLQKDPQLARRTDKKGQTALHMAVKGISCDVVKLILVADAAIVMLPDKFGNTALHVATRKKRAEIVQELLLLPDTNVNTLTRDHKTALDLAEGLPITEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNRNVSGIENELRKLHRAGVNNAGNSVTVVAVLFAAVAFAALFTVPGGDYDNGMAVMVHTAPFKAFFISNALALFTSLAVVLVQITIVRGEVKAERKVVEVINKMMWLASVCTSVSYITASYIVVGRRSKWAAILVTVIGGIIMGGVLGTMTYYVVKSKRSRRERKKEKKSKKEGTLRLSNSDESEINPIYAI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02302 578 ProSiteProfiles Ankyrin repeat profile. 289 322 IPR002110 GO:0005515
Vian2g02302 578 Gene3D - 212 423 IPR036770 -
Vian2g02302 578 FunFam Ankyrin repeat-containing protein ITN1 214 334 - -
Vian2g02302 578 MobiDBLite consensus disorder prediction 549 578 - -
Vian2g02302 578 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 42 556 - -
Vian2g02302 578 Pfam Ankyrin repeats (many copies) 282 331 IPR002110 GO:0005515
Vian2g02302 578 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 289 319 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 153 182 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 221 250 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 255 284 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 118 149 IPR002110 GO:0005515
Vian2g02302 578 SMART ANK_2a 187 216 IPR002110 GO:0005515
Vian2g02302 578 Gene3D - 42 211 IPR036770 -
Vian2g02302 578 ProSiteProfiles Ankyrin repeat region circular profile. 221 244 - -
Vian2g02302 578 SUPERFAMILY Ankyrin repeat 71 351 IPR036770 -
Vian2g02302 578 ProSiteProfiles Ankyrin repeat region circular profile. 153 176 - -
Vian2g02302 578 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Vian2g02302 578 Pfam Domain of unknown function 405 509 IPR026961 -
Vian2g02302 578 FunFam Ankyrin repeat-containing protein ITN1 41 179 - -
Vian2g02302 578 Pfam Ankyrin repeats (3 copies) 192 276 IPR002110 GO:0005515
Vian2g02302 578 Pfam Ankyrin repeats (3 copies) 71 176 IPR002110 GO:0005515
Vian2g02302 578 ProSiteProfiles Ankyrin repeat profile. 153 176 IPR002110 GO:0005515
Vian2g02302 578 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02302 Vian-Chr2 43406798 43409301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02302 18 578 Miscellaneous Gene Families AT3G09550 69.336 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02302 - - gmx:100779710 882.478