Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02282 ATGGTGGGTGTTATTTCGTTGGTAACTGGAATGATTGGTCCAAGTGGCTTTGGATCAGCTTCCACTGCAGAACAAGTTACTGAAGGAATTGATGCTGCCAACCTCACTGCGATTATCACAGGAGGAGCAAGTGGAATTGGGTTGGAGACAACACGAGTGTTGGCACTTCGGAAGGTTCATGTGATCATTGCAGTAAGAAACATGGCGTCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAGAATGAGTCTGCACGAGTCGACATAATGAAGCTCGATCTGTGCTCTCTCAATTCTGTGACATCCTTTGTCGACAACTTCATAGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTAATGTTCTGCCCCTTCGAACTCTCAGAGGATGGGATCGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTCCTGTTGACAAACCTGCTTCTTGAAAAAATGAAACAAACAGCACAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCGATTGCCCATAACTACACTTACATGAAGGGGATTAGATTCAATAAGATCAATGAGCGAAAAGGTTATGGTAACAAGAAGGCTTATGGACAGTCCAAGTTAGCAAACATACTGCATACAAATGAGCTTTCTCATCGCCTGCAGGAAGAGGGTGTGAACATCACAGCAAACTCAGTCCATCCAGGAGTAATAATGACACCTCTTATGAGACATTCTTCTTACCTTATGCACTTCTTGAAGATATTCTCCTTTTACATATGGAAGAACGTCCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAACGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCTATGCAAGCCAAGTGCGCATGCCAAAAACAAACATCTAGCAAAGAAACTCTGGGATTTCAGCAACGACTCATGCAATAAGAAGAACGTTACAGTTATATATAATTCCAGTTTGTTCTCGGAGGATGTTTCTGAACTTTTGATTTCTTGA 1026 0.424 MVGVISLVTGMIGPSGFGSASTAEQVTEGIDAANLTAIITGGASGIGLETTRVLALRKVHVIIAVRNMASAKEAKQRILEENESARVDIMKLDLCSLNSVTSFVDNFIALDLPLNILINNAGVMFCPFELSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGIEGRIINLSSIAHNYTYMKGIRFNKINERKGYGNKKAYGQSKLANILHTNELSHRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKIFSFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNLCKPSAHAKNKHLAKKLWDFSNDSCNKKNVTVIYNSSLFSEDVSELLIS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02282 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Vian2g02282 341 Gene3D - 26 321 - -
Vian2g02282 341 PANTHER RETINOL DEHYDROGENASE 14 315 - -
Vian2g02282 341 Pfam short chain dehydrogenase 36 183 IPR002347 -
Vian2g02282 341 Coils Coil 68 88 - -
Vian2g02282 341 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Vian2g02282 341 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vian2g02282 341 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Vian2g02282 341 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Vian2g02282 341 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vian2g02282 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Vian2g02282 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Vian2g02282 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Vian2g02282 341 CDD retinol-DH_like_SDR_c_like 36 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02282 Vian-Chr2 43123959 43127970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02282 35 244 Miscellaneous Gene Families AT2G29340 27.442 1.58e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02282 K11153 - gmx:100781156 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02282 2 43123959 43127970 Vian2g02282 2 43123959 43127970 ECH