Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02259 ATGACGGGATTTTCTCGCTCGCGCGATCACGCTTCTTCCTCTTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTCAATTTGCTCGCAAGGAGAGAAATCTCACCCCGAACCAAATATGTGGCCAAATGGCACTGGGTTGAAGCTTCTAAGTCAAAGTCTAGTCCTTATTCTCGTCCCAAGAATGAGGTTGTGAGAGATGCAAGACGCGGTCTCCTCTCATGGGTTGAGGCTGAATCATTACGGCATTTGTCAGCTAAGTATTGTCCCTTATTGCCTCCTCCTCGGTCTACTATTGCAGCGGCATTTAGTTCCGATGGGAAGGTTCTTGCCTCTACACATGGTGACCATACAGTGAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGCCATAGGAGAACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCGAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCCAACACATCAGAGTGCATAATATCTCATCATTTCTACCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAAAAAGGTGAAGCATCCTCTCCTATATTTGTGTTGAAGACAAAGCGCTCACTTCGGGCTGTGCATTTTCACCCACATGCCGCACCATATCTTTTAACTGCCGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGCTATTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATATTCAGCCTACAGAACATATTAGTTTGTCCACCGAACTACCTTATGTGTCATTCCCTTTCTTTTTTATGCCCTCATATACTCTTGACGAGTCAAGAACAGAACTACAACATTCTAGTCATGATGTGGGCTCAGGTAGCATGCAAATTGAGTCTTCTGCCATGGTACAGTTACAAGCAGATACAAGTGCAACAGAGCAACATGAGGCCACTGTGTCTCCCATGGATACATTCTCTGAGATGCCCACTAGTTCTCACACTGCTACAGAATATCCCACCCATACTTCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACGGATGAAACCAGACCTGCTGAAGGAAGCCAACATGGAAACTCTACTAATACCTATTCTTTTAATGGTGTGCTACATGGACTGTCTAGGCAAACTGCCAACCGTGGGGTTCCCTCTGAGTTGGGTCAATTTAACCAGTTTTTTCCTTCTAGTTCAAGAGATCCAAGTGCATGGGAGTTGCCTTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGCCGTGACATTCTAGCCCAACAGATTGGTTCTTCCATAATGCCATCTAATCTTTCCGGTTCTAATAATGATGCAGCAATTCCATCTTCAGCAATAACTGGCAGCATCAGCATACCAGGTTCTTCAACGAGATCAGGTTTACGGAATCATTTTTCACAATCCCGTCAACCTGTATCTGAATCAGGCAATCTTGCTACTTCTATTAATAATTCACATGATGGATCCGATATCCAAACAATCATGAGTCGAATTCAATCAGAACTTGCCGCTACATCAGTGGCTGCTGCAGCAGCGGCAGAGTTGCCCTGCACTGTGAAGTTAAGAGTGTGGTCACATGACATAAAAAATCCTTGTGTCCCACTTAATGCCGACAGATGTCGTCTGAACATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTGGCCGCCTGTGTTGCATGTATGCTTCCTCATATAGAGGCTGATCCAGGCTTAATAACTCCAGTACACCAAGAGCCGGGTGTTGCAACATCACCAACCCGACATCCAATCTCAGCACACCAAGTTATGTATGAGTTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACATCAATTCAGTTCTCTCCTACATCTGAGCACATACTACTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGTATTGTTATTGATGGAGAAACAACATTACCTATATACACAGTGCTAGAGGTATATAGGGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGACGGTGCCCATGCAGTGAATGGCAACGGACCAAGTTACTTTCCTGAGGAGACCATTATTGGAGTCAGTCAGTGA 2415 0.448 MTGFSRSRDHASSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWVEASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIQPTEHISLSTELPYVSFPFFFMPSYTLDESRTELQHSSHDVGSGSMQIESSAMVQLQADTSATEQHEATVSPMDTFSEMPTSSHTATEYPTHTSFSNGMGIGLSNLTMDGMETDETRPAEGSQHGNSTNTYSFNGVLHGLSRQTANRGVPSELGQFNQFFPSSSRDPSAWELPFLQGWLMGQSQVGVPSMLPHMGASRDILAQQIGSSIMPSNLSGSNNDAAIPSSAITGSISIPGSSTRSGLRNHFSQSRQPVSESGNLATSINNSHDGSDIQTIMSRIQSELAATSVAAAAAAELPCTVKLRVWSHDIKNPCVPLNADRCRLNIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLITPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGNGPSYFPEETIIGVSQ 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02259 804 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Vian2g02259 804 FunFam Activating molecule in BECN1-regulated autophagy protein 80 260 - -
Vian2g02259 804 Gene3D - 82 255 IPR015943 GO:0005515
Vian2g02259 804 MobiDBLite consensus disorder prediction 349 369 - -
Vian2g02259 804 Pfam WD domain, G-beta repeat 127 166 IPR001680 GO:0005515
Vian2g02259 804 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 20 799 - -
Vian2g02259 804 MobiDBLite consensus disorder prediction 1 22 - -
Vian2g02259 804 SUPERFAMILY WD40 repeat-like 100 242 IPR036322 GO:0005515
Vian2g02259 804 SMART WD40_4 85 123 IPR001680 GO:0005515
Vian2g02259 804 SMART WD40_4 169 206 IPR001680 GO:0005515
Vian2g02259 804 SMART WD40_4 739 779 IPR001680 GO:0005515
Vian2g02259 804 SMART WD40_4 126 166 IPR001680 GO:0005515
Vian2g02259 804 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 171 - -
Vian2g02259 804 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 175 IPR001680 GO:0005515
Vian2g02259 804 MobiDBLite consensus disorder prediction 509 541 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02259 100 267 Miscellaneous Gene Families AT5G08390 25.414 2.60e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02259 K17985 - gmx:100817857 1412.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02259 2 42752340 42758658 Vian2g02259 2 42752340 42758658 ECH