Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02257 ATGGCAGATTTAGAAAATTTGCTCTTGGAGGCAGCTGGTAGAACCCGACACTCTCGGCCAACTTCAAGAGGAGGACATGGTAATGGTGAGAATGTCTCAAGTTCAGATGATGAACATGAATATCCTGGCCCAAATCACTCTGGCTCACGAGTTCCCCTAAAGAAGAGATTTGATCCAAAGGAAAGATATGATGGCAAGGGAAGTCAGGAAGAAGAGGATGGCCAATCTGATGACAATGGTGACAGCAGCGATGAATATGATTTTGGTGATGATCTTTATAAGAATGAAGATGATAGGCGTAAGCTTTCTGAGATGACTGAACTACAGAGAGAGATGATATTATCAGATAGGGCTACCAAGAAGTATGATAAAGACTTATTGGGGAAGATATCATCAAAGCGGGAGAAGGGAAAGACAACTGTACCTGGGACACATACTTCACCTCCTCCATCATCTCGTGTGCGGTCATCAGTCCGATCAGTTGACCGGTCAACTGCCAAGGATGGTGCTTTAAATGAATTGCGTGCGAAAAGATTAAAGCAGCAAGATTCAGAAACAAACCGCAGACTAAATGAGGCTTCTAAAAGTCCAGAACCGGGACGTCTTTCACCAAAGCACAAACCTTTCTCTTCAACAAGTCTCACTAGCTCAAGTGACAGTGAAAGTGAAAATAGATCCCTGAGTGATGATGGAGGGTTGAGTCATGATGACATTATCATTGACAGTGATGATGACAGGATAATTTTACGATCTGAAGGGCTTTCATTTGAGGATATAAAAGAAATTACTGTTTGCAGATCGAAACTAGCAAAATGGTTTATGGAGCCCTTTTTTGAGGAGTTAATTGCTGGTTGTTTTGTAAGAGTTGGTATTGGTAGATCAAAGTCAGGACCTATCTACAGACTCTGCTTGGTAAAAAATGTTGATGCCACCGATTGTGATCGGCAGTATAAATTAGAAAATAAAATGACACACAAGTACTTAAATCTTGTCTGGGGAAACGAAACTTCTGCTGCAAGGTGGCAAATGACTATGGTTAGCGACTCTCTTCCACTTGAGGAGGAGTTCATCCAGTGGGTTAAGGAAGTGGAACGAAGAGGCGGTCGGATGCCAACAAAGAAAGAAGTGGAAATTAAAAAGCAAGCTATACAAAATATCAACTCGTTTGTTTACTCAGCTGCTACGGTGAAGCAGATGTTACAAGAGAAAAAATCTGCCAAAATAAGACCACTGAATATTGCAGCTGAGAAGGATCGGTTAAGAACGCAATTAGAAATAGCACAGAGTAAGCAAAATAATACTGAAGTGAATAGGATCATAACAAGGTTGCAAGAATTGGAGGAAGCTCAGCAGTCTAAGGAGAAGGATGCCAGAGCTCTGAAGCTTTCTGAGATGAATAAAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAATTGAAGCCAATAAATACAGATTTGAAAGCAGGAGAGGCAGGTTATGATCCATTTTCAAGGAGATGGACTAGATCAAGAAATTACTATGCCGCAAAGCCAACTGAAGAGGCTGCAGCTGAAGATAATAGTGTCATTGATATGGTGGCTGATGAAGGCAGCTATCAAACAAGAACAGCTGTGACAGGGGTGGCTGGCATGGCTGCTACTGCTGCAGCAATAAAAGCTGCTGCCGGTGCTGGGAAGTTAGTAGATACAAGTGCTCCGGTGGATCAAGGGACGGTGTCAAATGTGCTGCACGATTTTGACCTGCCAATATCATTATCCGTACTCCACAACTTTGGTGGAGCCCAAGGAGTTCAGGCAGGGCTTATGGCAAAAAAACAAAGAATAGAAGCAACTACTGGACCTCAAGTTCCGGAAAAGGATGGTAGGAAGCATGCGAGGACATTATCAATTAGTGATTACAAGCGAAGAATAGGGGTTTTTTTGAATTCTGCCTAA 1938 0.4221 MADLENLLLEAAGRTRHSRPTSRGGHGNGENVSSSDDEHEYPGPNHSGSRVPLKKRFDPKERYDGKGSQEEEDGQSDDNGDSSDEYDFGDDLYKNEDDRRKLSEMTELQREMILSDRATKKYDKDLLGKISSKREKGKTTVPGTHTSPPPSSRVRSSVRSVDRSTAKDGALNELRAKRLKQQDSETNRRLNEASKSPEPGRLSPKHKPFSSTSLTSSSDSESENRSLSDDGGLSHDDIIIDSDDDRIILRSEGLSFEDIKEITVCRSKLAKWFMEPFFEELIAGCFVRVGIGRSKSGPIYRLCLVKNVDATDCDRQYKLENKMTHKYLNLVWGNETSAARWQMTMVSDSLPLEEEFIQWVKEVERRGGRMPTKKEVEIKKQAIQNINSFVYSAATVKQMLQEKKSAKIRPLNIAAEKDRLRTQLEIAQSKQNNTEVNRIITRLQELEEAQQSKEKDARALKLSEMNKKNRFENFKNASELKPINTDLKAGEAGYDPFSRRWTRSRNYYAAKPTEEAAAEDNSVIDMVADEGSYQTRTAVTGVAGMAATAAAIKAAAGAGKLVDTSAPVDQGTVSNVLHDFDLPISLSVLHNFGGAQGVQAGLMAKKQRIEATTGPQVPEKDGRKHARTLSISDYKRRIGVFLNSA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02257 645 Coils Coil 417 463 - -
Vian2g02257 645 MobiDBLite consensus disorder prediction 206 222 - -
Vian2g02257 645 FunFam RNA polymerase-associated protein RTF1 254 386 - -
Vian2g02257 645 MobiDBLite consensus disorder prediction 141 159 - -
Vian2g02257 645 MobiDBLite consensus disorder prediction 160 202 - -
Vian2g02257 645 SMART rtf1 253 365 IPR004343 GO:0003677
Vian2g02257 645 Pfam Plus-3 domain 258 363 IPR004343 GO:0003677
Vian2g02257 645 MobiDBLite consensus disorder prediction 51 73 - -
Vian2g02257 645 SUPERFAMILY Plus3-like 255 386 IPR036128 GO:0003677
Vian2g02257 645 PANTHER UNCHARACTERIZED 71 637 - -
Vian2g02257 645 MobiDBLite consensus disorder prediction 87 140 - -
Vian2g02257 645 ProSiteProfiles Plus3 domain profile. 253 388 IPR004343 GO:0003677
Vian2g02257 645 Coils Coil 176 196 - -
Vian2g02257 645 Gene3D - 254 385 IPR036128 GO:0003677
Vian2g02257 645 MobiDBLite consensus disorder prediction 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02257 Vian-Chr2 42738100 42740037 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02257 K15178 - gmx:100817324 867.84