Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02252 ATGGAGGAGGAGGGTGACATATACGATGGTGCTAGAGCTCAGTTTCCTCTGTCGTTCGGGAAGCAATCGAAGCCTCAAACGCCTCTGGAATCCATCCACAATGCGACACGTCGTTCAACTTCCACTTCCAAAACCACCAACCAGCTTCCCTCTCTGTCCTCCTCTTCCAGGGAATGGCTCAATTCCCTCCGTCCTTCCAAAACCCCTATCCCACTGCCGCCTACCGATCACGACGATGCCCCTCTCGTGGGACCTCCTCCGCCTCCGCCCTCAGCTTCCCACGACGACGACGGGGACGGCGACATGATTGGCCCGCCCCCGCCGCCACCTAACGCGTCGGAGTCCGAAGATGATTCGGATGAAGACGAAGTAGGGACCCGCTTCCGGATTCCCCTTAGTAACGAAATTGTTCTCAAGGGCCATACCAAGGTTGTGTCAGCTCTTGCTGTGGATCATACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATGCTCGATTGGAATCTTTTCGTCAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCGACTGCTGATCGCTTTTTGTGCGTCACTGGATCAGCTCAAGCAAAGATTTATGACCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATTTAAAGAATACCAAGGGCCACATATCTGGATTGACATGCGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAAGATGGCTCACTACGCATATGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTCGCAAGACCTGGAAGAGTTCCTGTAACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCGATCCAGATTTGGAATATTAAGCCTGGTTGGGGGAGTAGGCCAGATCTACACATTGAAAAAGGACATGAAGATGATATTAGTGGTCTGAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTACGCAAAATAAAAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTTCCTTCAGTCCCGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCTCGACAGGAGGTTTATTGTGCTTCTTCGATAGATTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCATCCACTTGCAGTGTTGTTCAGTGTTATTGGCATCCTAAACTGAATCAGATACTTGCAACTACTGGTGATAAAAGTCAAGGAGGGACTCACGTACTATATGATCCAACCCTAAGTGAGAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCATGCTTTACCACTATTTAGAGATCAGCCAAGCCGAAAGCGACAGCGAGAGAAAGTGCTGAAGGATCCATTGAAGTCCCATAAACCTGAATTACCAATTACAGGTCCTGGATTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGCATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCGAAGGATCCAAAATTCATTGCTCCAGCATACGCAGAAACCCAACCTGAGCCAGTTTTTGCCAAGTCAGATTCTGAGGATGAAGATAAATGA 1830 0.4612 MEEEGDIYDGARAQFPLSFGKQSKPQTPLESIHNATRRSTSTSKTTNQLPSLSSSSREWLNSLRPSKTPIPLPPTDHDDAPLVGPPPPPPSASHDDDGDGDMIGPPPPPPNASESEDDSDEDEVGTRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNISFSPDEQLFLTGTSVERESSTGGLLCFFDRLNLELVSRVGISSTCSVVQCYWHPKLNQILATTGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEDK 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02252 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 281 IPR001680 GO:0005515
Vian2g02252 609 MobiDBLite consensus disorder prediction 588 609 - -
Vian2g02252 609 MobiDBLite consensus disorder prediction 506 526 - -
Vian2g02252 609 Gene3D - 32 225 IPR015943 GO:0005515
Vian2g02252 609 Gene3D - 226 467 IPR015943 GO:0005515
Vian2g02252 609 SMART WD40_4 276 320 IPR001680 GO:0005515
Vian2g02252 609 SMART WD40_4 327 366 IPR001680 GO:0005515
Vian2g02252 609 SMART WD40_4 131 170 IPR001680 GO:0005515
Vian2g02252 609 SMART WD40_4 180 217 IPR001680 GO:0005515
Vian2g02252 609 SMART WD40_4 229 272 IPR001680 GO:0005515
Vian2g02252 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 179 IPR001680 GO:0005515
Vian2g02252 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 274 - -
Vian2g02252 609 MobiDBLite consensus disorder prediction 19 63 - -
Vian2g02252 609 ProSitePatterns Trp-Asp (WD) repeats signature. 307 321 IPR019775 -
Vian2g02252 609 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
Vian2g02252 609 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Vian2g02252 609 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Vian2g02252 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 368 - -
Vian2g02252 609 Pfam WD domain, G-beta repeat 294 320 IPR001680 GO:0005515
Vian2g02252 609 Pfam WD domain, G-beta repeat 332 366 IPR001680 GO:0005515
Vian2g02252 609 Pfam WD domain, G-beta repeat 237 272 IPR001680 GO:0005515
Vian2g02252 609 Pfam WD domain, G-beta repeat 136 170 IPR001680 GO:0005515
Vian2g02252 609 CDD WD40 137 456 - -
Vian2g02252 609 ProSitePatterns Trp-Asp (WD) repeats signature. 259 273 IPR019775 -
Vian2g02252 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Vian2g02252 609 MobiDBLite consensus disorder prediction 67 93 - -
Vian2g02252 609 SUPERFAMILY WD40 repeat-like 121 455 IPR036322 GO:0005515
Vian2g02252 609 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 608 - -
Vian2g02252 609 FunFam WD repeat-containing protein 70 227 469 - -
Vian2g02252 609 MobiDBLite consensus disorder prediction 1 124 - -
Vian2g02252 609 MobiDBLite consensus disorder prediction 506 540 - -
Vian2g02252 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 368 IPR001680 GO:0005515
Vian2g02252 609 FunFam Nucleotide binding protein 85 226 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02252 241 439 Miscellaneous Gene Families AT5G08390 25.000 2.23e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02252 K24752 - gmx:100815380 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02252 2 42685981 42689773 Vian2g02252 2 42685981 42689773 ECH