Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02248 ATGGAAGAGAATGCATTGAGGGCCATGGACGCTGAGCAACTGAGAGAGCACGCTCATAAGATGGTCGATTTCATTGCCGATTACTACAAAACCATTCAAAACTTCCCCGTTCTCAGCCAAGTCCAGCCAGGTTATCTGGGGAAGCTTTTACCAGATTCTGCTCCCGAGTATCCTGAATTGCTGGCTAATGCGCCCGCAATTGCAGCAATCAATACTGGTTACGGTTATGTAAAGGAGAAAATACTCCCAGGGGTGACGCATTGGCAAAGTCCGAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTTGGAGAGATGCTCAGTGCGGGTCTTAGCATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCCACTGAACTTGAAAGCATTGTTCTTGACTGGCTGGCTAAGGCGTTCCAGTTGCCTGAAGATTTCTATTCTAGCGGGAAAGGTGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTATACTAGTTGTCCTATTAGCTGCACGTGACAAGATCTTAAGAAGGCTTGGAAGGAGTGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACGAAAAGCTTGTCAGATATCAGGACTTAATCCAGAGCTTTGCAAGTTGCTTAAAGTTGATTCTGCAACAAATTATGCACTCTCTCCTGAAGTACTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGCACCACTTCGTCAACAGCTATTGATCCCCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAATCTTTGGTTTCACGTGGATGCTGCTTATGCTGGCAGTGCTTGTATATGTCCAGAGTACCGCCACTACTTTGACGGTATTGAAGAAAGTGACTCATTTAACATGAATGCACATAAATGGTTCCTCACCAACTTTGACTGTTCAGTACTTTGGGTTAAGGATAGAAGTTCTCTGATTCAATCACTGTCCACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACCTGGTCATAGATTACAAAGACTGGCAAATTCCTCTTGGTCGTCGCTTTAGATCATTAAAATTGTGGATGGTGTTGCGACTTTATGGTTTGGAAGGTCTGCGAAGCCACGTAAGAAACCACATTGAGTTAGCTGCTTATTTTGAAGAGCTTGTTAGTCAGGACACAAGATTCAAGGTCGTTGCACCTCGTACATTCTCCTTAGTTTGCTTTCGGCTATTGCCCCCTCTCAATTCCGAAGATCATGGTAATAAACTAAATAGCGATCTACTAGACTCAGTAAATTCAACAGGAAATATTTTCATAACACACACGGTTCTATCAGGTGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCACTACTGCGTGGCAGATTTTTCAAGAGAAAGCCACTGCTCTACTTGAGAGTTTACAGGATTAA 1500 0.4347 MEENALRAMDAEQLREHAHKMVDFIADYYKTIQNFPVLSQVQPGYLGKLLPDSAPEYPELLANAPAIAAINTGYGYVKEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLSIVGFSWITSPAATELESIVLDWLAKAFQLPEDFYSSGKGGGVIQGTASEAILVVLLAARDKILRRLGRSALPKLVMYASDQTHSALRKACQISGLNPELCKLLKVDSATNYALSPEVLSEAISNDIAGGLVPFFLCATVGTTSSTAIDPLPALGKIAKTNNLWFHVDAAYAGSACICPEYRHYFDGIEESDSFNMNAHKWFLTNFDCSVLWVKDRSSLIQSLSTNPEFLKNKASQGNLVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHVRNHIELAAYFEELVSQDTRFKVVAPRTFSLVCFRLLPPLNSEDHGNKLNSDLLDSVNSTGNIFITHTVLSGEYILRFAVGAPLTERRHVTTAWQIFQEKATALLESLQD 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02248 499 Gene3D - 9 98 - -
Vian2g02248 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 75 425 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vian2g02248 499 CDD DOPA_deC_like 93 484 - -
Vian2g02248 499 Gene3D - 99 391 IPR015421 GO:0003824
Vian2g02248 499 Gene3D Aspartate Aminotransferase, domain 1 392 499 IPR015422 GO:0003824
Vian2g02248 499 PRINTS Aromatic-L-amino-acid decarboxylase signature 37 54 IPR010977 GO:0006520|GO:0016831
Vian2g02248 499 PRINTS Aromatic-L-amino-acid decarboxylase signature 364 379 IPR010977 GO:0006520|GO:0016831
Vian2g02248 499 PRINTS Aromatic-L-amino-acid decarboxylase signature 155 175 IPR010977 GO:0006520|GO:0016831
Vian2g02248 499 PRINTS Aromatic-L-amino-acid decarboxylase signature 14 33 IPR010977 GO:0006520|GO:0016831
Vian2g02248 499 PRINTS Aromatic-L-amino-acid decarboxylase signature 407 426 IPR010977 GO:0006520|GO:0016831
Vian2g02248 499 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 6 496 - -
Vian2g02248 499 SUPERFAMILY PLP-dependent transferases 9 491 IPR015424 -
Vian2g02248 499 FunFam Histidine decarboxylase 99 391 - -
Vian2g02248 499 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 308 329 IPR021115 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02248 Vian-Chr2 42591602 42598212 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02248 K01593 - gmx:100791074 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02248 2 42591602 42598212 Vian2g02248 2 42591602 42598212 ECH