Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02239 ATGGCGTCGTCTTATCCTGGTTCCGTTAGTGCCACACAGGTTGGCTCCTACTTCGTCGGACAGTACTATCAGATTCTCCGCCAGCAGCCGAATCTTGTTCACCAGTTTTACTCTGATTCCAGCAGCATGATTCGTGTCGATGGAGATTCCGTTGAAACTGCGCAAGATGTGTTGGTTAGCAATTACACTGTGGCTATAGCTAGAGAACACAGAATGGATGCTCGATTTTTTAGGTTTTGGTTTTTAGATGTATTGGCTGGTGCTAATGCCTACTGGCTGACTGACCAGGTTAGGGTTCTCATGCAGCAAATTCATTCAATTGTTTCGTTACTGAGTTTCACTTCAATTGAGATCAAAACCATCAATTCTCTCGACTCTTGGGATGGAGGTGTGATTGTCATGGTCTCAGGTTCTGTGAAGCTAAAGGATATCACTGGGAGGCGGAAGTTCGTTCAAACCTTCTTTCTCGCTCCTCAAGAGAAGGGTTACTTTGTTCTGAATGATATTTTTCATTTTGTCGAAGAAGGTGTTACATACCCAAATATGATACCAGTGCCATCTGAAATTGACAATCAACCGCATGTGTCTGCATCTCTTGCAGAGCCACCAGTAGCTTCAGACTACGGTTTGGAGGAAGAAGCTAGGGAATATGTAAACTCAGTTCATATTGACGATGATCCAGTGGATAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACATGAAGATCTTGAAACCGAAATAGTTGTGGAGGAAACTTCTGCACAGGAGGCATCTCCACCAATTCACAATTTACGAGTCTCCAAAGGACAGCCCGTGTTATCAGCTGCTCCACAGCATGTTCCACAATACACCTTTAAAAGTGCCCCACCTCCTTCAGAGTTGAACCATGTAGCACAGCCCGCAATTCAGCAGTCGAGCCCTGTATCTATGTATGTCCCTGAGTCAGGGTCTGAGCCTGCAGATGAAGGCTATGGGCTAGAAGACGAAGGTGAAGTAACCTCTGTCTATGTGAGAAACTTGCCTGCTAACGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGACAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTGTGCTATGCATTTGTGGAATTTGAAGATATCATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCAATTCAGTTAGCTGGAAGACAGGTATACATAGAAGAGCGGAGGCCAAACAGTGGCAGTGCAGTTCGAGGAGGAAGTAATTGTCGGAGGGCACCTAATAAATACATGCTCAATAGCATTTGTGATCTGAGTGATAGCCTTATGGCTGAACATGCTAATGAACCTGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGCAAGGAACATGGGAAGGGGAAGTAATCTGGATAATTCAGACTACTCCAGACCAAGAGGCGATGGTTATCTTCAGCGTAGTTCACGATGAGAAAGAAAATGGCAAAAGCATGGACTGA 1524 0.4495 MASSYPGSVSATQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAQDVLVSNYTVAIAREHRMDARFFRFWFLDVLAGANAYWLTDQVRVLMQQIHSIVSLLSFTSIEIKTINSLDSWDGGVIVMVSGSVKLKDITGRRKFVQTFFLAPQEKGYFVLNDIFHFVEEGVTYPNMIPVPSEIDNQPHVSASLAEPPVASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLHEDLETEIVVEETSAQEASPPIHNLRVSKGQPVLSAAPQHVPQYTFKSAPPPSELNHVAQPAIQQSSPVSMYVPESGSEPADEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKTDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAVRGGSNCRRAPNKYMLNSICDLSDSLMAEHANEPEGEEAEAVIKQMLREGVLVQGTWEGEVIWIIQTTPDQEAMVIFSVVHDEKENGKSMD 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02239 507 Gene3D - 332 425 IPR012677 -
Vian2g02239 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 411 IPR000504 GO:0003723
Vian2g02239 507 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 421 IPR039539 -
Vian2g02239 507 SUPERFAMILY NTF2-like 10 173 IPR032710 -
Vian2g02239 507 Gene3D - 5 176 - -
Vian2g02239 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 399 IPR000504 GO:0003723
Vian2g02239 507 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 172 IPR018222 -
Vian2g02239 507 SUPERFAMILY RNA-binding domain, RBD 331 426 IPR035979 GO:0003676
Vian2g02239 507 CDD NTF2 10 174 IPR018222 -
Vian2g02239 507 CDD RRM_SF 336 407 - -
Vian2g02239 507 Pfam Nuclear transport factor 2 (NTF2) domain 14 172 IPR002075 -
Vian2g02239 507 SMART rrm1_1 335 407 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02239 Vian-Chr2 42491048 42495997 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02239 - - gmx:100787900 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02239 2 42491048 42495997 Vian2g02239 2 42491048 42495997 ECH