Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02186 ATGGACAAGGGGGGTGTTAGTAGTACAAACATTGAGACTGAAAAGGGTAAAGAATCCACGCAACTACACACTTCCAAAGGTGGTACAAAACGAGGGAAAGATGCTGATAGTGAGCGAAAATCAAAAGTTGCTAAGGCCAAGGAAGATGTATCTGCGAGCAGCAAAGCATCTGTTAAGAATTATAATGAAACAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAAATCCAGAGCAAAGAAATATGGGCTCTGAAAGATGATCTCAAAAAGAATGTGACAACAACAGAGTTTCGTGAAATGCTGGAAGCCAATGGTCAAGACTCAACAGGATCCGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGATGCACTGGATACGTGTCAGAGTGGAGTAAATGTTCTTACTCTACATGCGAACCAAAACGTGTTGAAGGGAAGTGGAAAATCCCAGAAGAAACAAATAATAAATACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGAAAATCTGCTGAAAGTCAAATTGCAACAGCTAATCAGCATCAATCATTGAAGGCTGAAAATTTCCAAGATATCAAAGTTGCTATCTGTGGATTAGCTAATGACACCATTGAGGAATGGAAACGCAAAATTAATGCCATGGGTGGAATCTTTCATGCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGTGCTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATTCCAATAGTCAGAGAGGACTACTTGATTGACTGCATACAGAAAAAGAAGAGACTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACAAAGTGCTGTTCATGAGGCTTCTGGCCTACAAGAGTCTGGCCACATACTTGTGGAAGGAAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGTTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTTTTTGTTTCGTAAATGGGGTCGAGTAGGAAATGACAAGATTGGAGGAGATAAACTGGAGGGCGAAATGTCAAAATCTGATGCAATCTGTGATTTCAAACGATTATTCTTTGAGAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACCATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGTGTTAACAAACAGGTATCAAACAAGAAAAAAAATGATAATGACAGCAAACTACCCCCGCCATTAATAGAATTGATTAAGATGCTCTTCAACGTGGAAACTTATAGATCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTAAGCAAAAGCAATATCCAAAACGGGTTTGAAGCATTGACTGATATACAAAATCTGTTAAAACTTACTGATTCTGATCCATCAATCAAGGAAAGCTTACTTATTAATGCCAGCAACCGGTTCTTCACCATGATCCCTTCTATTCATCCACATATTATTAGGGATGAAGATGATTTTAAATCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCTAGATTAGTTGGATTTGATGCCAACAATGAGGACTCAATTGATGATAGTTATAAGAAGCTCCACTGCGATATATCTCCACTTCCTCATGATAGTGAAGATTTTTGTTTAATTGAAAAGTTTCTCCATAATACTCATGCCCCTACACATACGGACTGGAGTCTTGAGCTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATAGCCCCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGGAAAGGGGTGTACTTTGCGGACCTGGTCAGCAAAAGTGCCCAGTATTGCTTCACTGATAAGAAAAACCCTGTTGGTCTAATGCTATTGAGTGAAGTTGCACTTGGAAACATCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCCGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAAGAATCGGAATATGCAAAGTGGAGAGGCGATGTGACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCCCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA 2436 0.4011 MDKGGVSSTNIETEKGKESTQLHTSKGGTKRGKDADSERKSKVAKAKEDVSASSKASVKNYNETGEACDLEKKMEIQSKEIWALKDDLKKNVTTTEFREMLEANGQDSTGSELDLRDRCADGMMFGALGLCPICSGFLRYSGGMYRCTGYVSEWSKCSYSTCEPKRVEGKWKIPEETNNKYLKKWFKSQKGKKPVRILPLPSPRKSAESQIATANQHQSLKAENFQDIKVAICGLANDTIEEWKRKINAMGGIFHAKVKKDTNCLVVGGVLNDEAEMRKARRMKIPIVREDYLIDCIQKKKRLPFDMYKVEMIGEASSMVTIKVKGQSAVHEASGLQESGHILVEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCFLFRKWGRVGNDKIGGDKLEGEMSKSDAICDFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSNKKKNDNDSKLPPPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQNGFEALTDIQNLLKLTDSDPSIKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNEDSIDDSYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNIYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYAKWRGDVTVPCGKPVPSNVKASELMYNEYIVYNTAQVKMQFLLKVRFHHKR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02186 811 Gene3D - 127 187 IPR038650 -
Vian2g02186 811 SMART BRCT_7 222 300 IPR001357 -
Vian2g02186 811 MobiDBLite consensus disorder prediction 1 15 - -
Vian2g02186 811 ProSiteProfiles PARP alpha-helical domain profile. 461 579 IPR004102 GO:0003950
Vian2g02186 811 FunFam Poly [ADP-ribose] polymerase 127 188 - -
Vian2g02186 811 Pfam WGR domain 350 429 IPR008893 -
Vian2g02186 811 Pfam PADR1 (NUC008) domain 117 166 IPR012982 GO:0008270
Vian2g02186 811 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 61 200 IPR047572 GO:0008270
Vian2g02186 811 CDD parp_like 462 806 - -
Vian2g02186 811 SUPERFAMILY BRCT domain 221 310 IPR036420 -
Vian2g02186 811 Gene3D - 53 126 - -
Vian2g02186 811 Gene3D - 445 595 IPR036616 GO:0003950
Vian2g02186 811 Pfam Poly(ADP-ribose) polymerase catalytic domain 606 807 IPR012317 GO:0003950
Vian2g02186 811 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 462 596 IPR036616 GO:0003950
Vian2g02186 811 ProSiteProfiles PARP catalytic domain profile. 586 811 IPR012317 GO:0003950
Vian2g02186 811 Gene3D BRCT domain 216 317 IPR036420 -
Vian2g02186 811 ProSiteProfiles BRCT domain profile. 220 310 IPR001357 -
Vian2g02186 811 FunFam Poly [ADP-ribose] polymerase 218 319 - -
Vian2g02186 811 FunFam Poly [ADP-ribose] polymerase 596 811 - -
Vian2g02186 811 MobiDBLite consensus disorder prediction 27 49 - -
Vian2g02186 811 MobiDBLite consensus disorder prediction 1 56 - -
Vian2g02186 811 FunFam Poly [ADP-ribose] polymerase 454 595 - -
Vian2g02186 811 ProSiteProfiles WGR domain profile. 339 439 IPR008893 -
Vian2g02186 811 SUPERFAMILY WGR domain-like 318 444 IPR036930 -
Vian2g02186 811 SUPERFAMILY ADP-ribosylation 595 810 - -
Vian2g02186 811 Pfam BRCA1 C Terminus (BRCT) domain 225 297 IPR001357 -
Vian2g02186 811 CDD WGR_PARP1_like 340 446 - -
Vian2g02186 811 SMART WGR_cls 350 434 IPR008893 -
Vian2g02186 811 SMART PADR1_2 115 168 IPR012982 GO:0008270
Vian2g02186 811 FunFam Poly [ADP-ribose] polymerase 53 126 - -
Vian2g02186 811 Gene3D - 596 811 - -
Vian2g02186 811 Pfam Poly(ADP-ribose) polymerase, regulatory domain 462 592 IPR004102 GO:0003950
Vian2g02186 811 PANTHER DNA LIGASE 15 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02186 Vian-Chr2 41807488 41814248 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02186 K24070 - gmx:100815900 1452.19