Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02156 ATGGCTCTTGCACTCAAGTCAAGTTGCTTCTTGCAATTGAAGAAACCTGAGGTCGGTTTCCATGTTTGTTTTTCCTCTGAGAAGGCTTTAGTCTCTGTGAAGAGATACACTCCAGTGGCTGCTATGAGGACCATGGAAGTTCCGGGACTCTCTGAAACATTCACCAGACTGAAAAAAGAAGGAAAAGTGGCTTTCATACCGTATATTACAGCCGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGTGTTCCATATTCTGATCCCTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTCTTGCAAAGGGGACCAATTTCAATGCAATCATTTCTATGTTGAAGGAGGTTGTTCCGGAATTGTCATGTCCAATTGCACTGTTCACATATTACAATCCAATACTGAAGCGTGGTACTGATAAATTTATGTCTATTGTAAGAGAAACTGGCGTACATGGGCTCGTGGTCCCAGATGTCCCTCTGGAGGAGACGGAGACTTTAAGGGTGGAGGCTAAGAAAAATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCAAAAAACCGCATGAAGGCCATTGTTGATGCAGCAGAAGGATTTGTGTACCTTGTGAGTGCGGTGGGGGTCACTGGAGCCCGATCATCCGTTAGTGGTAATGTTCAGTCTCTTCTGCAGGAAATTAAAGAGGCAACAACTAAACCTGTGGCTGTTGGTTTTGGAATATCAAAGCCCGAGCATGTTAAACAGGTAGCAGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATGGTGAAGGTGCTTGGAGAAGCCAAATCTCCTCAAGAGGGATTGAAAGAGCTGGAAGCTTTTGCCCGCTCCTTAAAGGAGGCACTTCCTTAA 936 0.4605 MALALKSSCFLQLKKPEVGFHVCFSSEKALVSVKRYTPVAAMRTMEVPGLSETFTRLKKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTDKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKNRMKAIVDAAEGFVYLVSAVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARSLKEALP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02156 311 Gene3D Aldolase class I 49 311 IPR013785 -
Vian2g02156 311 ProSitePatterns Tryptophan synthase alpha chain signature. 94 107 IPR018204 GO:0004834
Vian2g02156 311 CDD Tryptophan_synthase_alpha 64 307 IPR002028 GO:0004834|GO:0006568
Vian2g02156 311 Hamap Tryptophan synthase alpha chain [trpA]. 60 309 IPR002028 GO:0004834|GO:0006568
Vian2g02156 311 Pfam Tryptophan synthase alpha chain 54 309 IPR002028 GO:0004834|GO:0006568
Vian2g02156 311 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 44 310 IPR002028 GO:0004834|GO:0006568
Vian2g02156 311 FunFam Tryptophan synthase alpha chain, chloroplastic 48 311 - -
Vian2g02156 311 NCBIfam tryptophan synthase subunit alpha 54 307 IPR002028 GO:0004834|GO:0006568
Vian2g02156 311 SUPERFAMILY Ribulose-phoshate binding barrel 50 290 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02156 Vian-Chr2 41479980 41484229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02156 K01695 - gmx:100808400 548.51