Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02152 ATGGGTCTGAGGTTTCTCTCTGTATCAATGGCGGGAAAAGGAGGGAAGGGGCTCGTGGCTGGGAAAACCACCGCTGCCAACAAGGACAAAGACAAGGATAAGAAAAGGCCTGTCTCTCGTTCATCCCGTGCTGGGATCCAGTTTCCAGTGGGGCGTATCCACAGGCAGTTGAAGCAAAGGGTGCAAGCCAATGGACGTGTGGGGGCAACTGCTGCAGTATACTTGGCATCAATTCTGGAATATCTGACTGCTGAGGTTCTGGAGTTGGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCCAGACACTTGCAGCTGGCTATCAGGGGAGACGAGGAACTTGACACCCTCATCAAAGGGACCATTGCTGGTGGTGGTGTCATCCCTCACATCCACAAGTCCTTGATCAACAAGGCTGCCAAAGAATGA 438 0.5251 MGLRFLSVSMAGKGGKGLVAGKTTAANKDKDKDKKRPVSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKAAKE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02152 145 MobiDBLite consensus disorder prediction 25 40 - -
Vian2g02152 145 PRINTS Histone H2A signature 36 58 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 PRINTS Histone H2A signature 66 81 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 PRINTS Histone H2A signature 95 109 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 PRINTS Histone H2A signature 122 140 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 PRINTS Histone H2A signature 81 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 SUPERFAMILY Histone-fold 12 122 IPR009072 GO:0046982
Vian2g02152 145 CDD H2A 36 141 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 Gene3D Histone, subunit A 24 145 IPR009072 GO:0046982
Vian2g02152 145 MobiDBLite consensus disorder prediction 19 45 - -
Vian2g02152 145 Pfam Core histone H2A/H2B/H3/H4 23 113 IPR007125 GO:0003677
Vian2g02152 145 FunFam Histone H2A 24 145 - -
Vian2g02152 145 Pfam C-terminus of histone H2A 115 144 IPR032454 -
Vian2g02152 145 PANTHER HISTONE H2A 30 141 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vian2g02152 145 SMART h2a4 25 145 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02152 Vian-Chr2 41427835 41429125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02152 K11251 - gmx:100807862 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02152 2 41427835 41429125 Vian3g01841 3 21180150 21181192 PCT