Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02130 ATGCTTGGAGTGAGAAAGCTCAAAACAGGGCCTGATATCCCTTTGGTTTTAAGTGTCATGGTTGCTAATTGCAATTATAGAACAGCCCAAGTTTCCAGTGGCAAAAGTGTCAGGTATATTGTTAAGTCGGCTGTCTCTTGTTTAGTTAAATCAAGTTCATCAGCATTTCTACTGGGATCAGGGAATAAATTTTCTCTTCAAGGACTATATTTCTCTAGTGTGGCTGAAAGAATCCTGGTCCATGCTCAAGACCCTGCCAAAGTTAGTTTGGAGATACAAAATGCTATCGATTTGAATCAATTAGATTATTCGTGGAAATTATTGGAGCAGCATATGCACATGGAGGGGTTTCCCAGAAAATCAGTCATCAGTAAGCTTGTAACAAGCTATGTGGACAGCCTTGATACGAAATTGCTAGGAAAGGCTTATGAGTTGGTAGAACGTGCTATTGAGAAAGGTAGACAAGATTTGTTGGAAAAGGATGTACTTATCTACCTCAGCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCATTTTAAGAAAGATGATAGATATGGAGCATTTTCCCTCAGTCACTGCTTGGTCTGCAGTTTTAGCGCACATGTCACAAACAGCAGAAGGAAGTTACCTTGCTGCGGAGTTGATTCTTGAAATAGGTTATTTATTCCAGAACAATAGAATAGATCCGCGTAAAAGGAGCAATGCACCTTTGATAGCCATGAAGCCAAACAGTGCTGCTTTTAGCATTGCTTTGGCAGGGTGCCTCCTATTTGAGTCATCTAGGAAGGCAGAACAGCTTCTGGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCACGTGTATACGAGAGAAATGGGCGAAGGGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCCCCAAATCTAACTGATTTACAGTTTCGACATTTCTATAATTGTTTATTGACATGCCATTTGAGATTTGGGGATCTAGATTCTGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGATGAATGCCGATGGAATTGACCATAACCGTTCTCCGGAATTGGCTTCTGTCCATAGTTTGAACAAGATTAAAGATTTAGATAGTTTACAAAATAACAGGTCAAATTCAAGTGCTGTATTATCTTATGAGGAGTTCTCTAAAGATAGGAACTTCTCAAAGCTTGAGGCAGAGTCCAAAGCTATACTTGATTCTTTATTATCAAAGTTGCAGATGCGGGTGGACTTGATCACAACCAAGCATGGTATATTGCAGCCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTATGCTAGAAGCTGGCAAGACCAAAGATTTAGCTGTATTTCTTCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGACAATTCAGCTTTGGTTCATGTTATTAACGCGTGCATCTCACTTGGATGGCTGGACCAAGCACATGATCTCCTGGATGAAATGCGTCTAGCCGGAGTTAGAACTGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCAGAGCGAATAGGGTGGCAGATGTCACATCGCTTCTGAGAGATGCTAAGATAGCTGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGAGTTCTCCAGCAAGACACACAGGGTGCACTCCAACTTTTTAAAGAGAGGAAAGAGGCTAGAATTCCAAGAGTCACTCAACAAAACTCTGGCATGATGGCTAAAGATGGAGCGGATACTGAAGAAGCTGGGCTAATGACCAAGCTGTTACAGGAAATCAAGGAAGGGCAGAAAGTGGACTGTGGAGTGCATGACTGGAATAATGTAATCCACTTTTTTTGCAAGAAGAGACTGATGCAAGATGCAGAAAAGGCTCTAAAGAAAATGAGAAGCTTAGGCCACTTACCAAATGCTCAAACTTTCCATTCTATGGTCACAGGGTATGCTGCCACTGGAGGAAAATATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAAGGTCTTGCTTCTTCTGTCTCCATGACGTTTGATCAGGAACTTCTTGATTCTGTGTTGTATACGTTTGTAAGGGGTGGATTCTTCGTTCGAGCCAATGAAGTTGTGACCATGATGGAAAAAGGAAACATGTTTATTGACAAATACAAGTACCGAATGCTGTTCTTGAAATACCATAAATCACTTTACAAAGGGAAGGCTCCGAAATTTCAGACAGAATCCCAACTAAGCAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGACTTGA 2355 0.4127 MLGVRKLKTGPDIPLVLSVMVANCNYRTAQVSSGKSVRYIVKSAVSCLVKSSSSAFLLGSGNKFSLQGLYFSSVAERILVHAQDPAKVSLEIQNAIDLNQLDYSWKLLEQHMHMEGFPRKSVISKLVTSYVDSLDTKLLGKAYELVERAIEKGRQDLLEKDVLIYLSFGLAKARLPVPASTILRKMIDMEHFPSVTAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRIDPRKRSNAPLIAMKPNSAAFSIALAGCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVYERNGRREELKKLQRHIEEAPNLTDLQFRHFYNCLLTCHLRFGDLDSASNMVLEMLRKAKEARNSLAAAKFMMNADGIDHNRSPELASVHSLNKIKDLDSLQNNRSNSSAVLSYEEFSKDRNFSKLEAESKAILDSLLSKLQMRVDLITTKHGILQPTETIYVKLVKAMLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRVADVTSLLRDAKIAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKERKEARIPRVTQQNSGMMAKDGADTEEAGLMTKLLQEIKEGQKVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHLPNAQTFHSMVTGYAATGGKYQEVTELWGEMKGLASSVSMTFDQELLDSVLYTFVRGGFFVRANEVVTMMEKGNMFIDKYKYRMLFLKYHKSLYKGKAPKFQTESQLSKREAALAFKRWIGLT 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02130 784 Gene3D Tetratricopeptide repeat domain 431 595 IPR011990 GO:0005515
Vian2g02130 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Vian2g02130 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Vian2g02130 784 PANTHER BNAC05G43320D PROTEIN 22 783 - -
Vian2g02130 784 Gene3D Tetratricopeptide repeat domain 169 383 IPR011990 GO:0005515
Vian2g02130 784 Gene3D Tetratricopeptide repeat domain 598 780 IPR011990 GO:0005515
Vian2g02130 784 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Vian2g02130 784 NCBIfam pentatricopeptide repeat 525 557 IPR002885 -
Vian2g02130 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Vian2g02130 784 Pfam PPR repeat 324 350 IPR002885 -
Vian2g02130 784 Pfam PPR repeat 494 519 IPR002885 -
Vian2g02130 784 Pfam PPR repeat family 631 676 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02130 Vian-Chr2 41158076 41160430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02130 525 753 Miscellaneous Gene Families AT4G11690 21.552 1.54e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02130 - - gmx:102661989 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02130 2 41158076 41160430 Vian2g02130 2 41158076 41160430 ECH