Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02107 ATGAGTGTTCAGCTATCAGCTTTATGGGTCCCCAACTCTCCGTCAATTCCCACAAACTTCCTTCCCAACCGTGGAAGATTCTCCATAATTGGCGTGGGAGGCCCCAGTTCGAGGGATAATGGATATGGAAATCCCAACGGCAACTTATTTGATGGGTTTCAAGGAGAGAGTGATCATTGGAGTGACCTGGACACTGATCTTTATCACTGGACAAAGACATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAAGAACTGAAGGCGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCCATGTCCACAAGTCATCCGCAGGCAAGTAATTCAATGGATATATGGCTTGGAAATAGAAAGAGAATTTTGGTCTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGAACAAAGGTTGTCTTCTCCAATGGGAAGCTTGGAATGGGAACAATGAAGCTAGGCCGTTTAGCAAAGGAATTAGCAGCTGATGTAAATATTAAGCGTAGAGCCAAAGGGCTACTTCCTCGTGCGATTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCCAGGCCAGGAGTTACAAGAGAGTTGAGGTGGGTTCGTTTTGGTAAAGATCTTGAACTTCTGGATTCTCCTGGGATACTCCCAATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTCGCCATATGTGATGATATCGGAGAGAGGTCCTATGATGTGGCTGATGTTGCTGCAATTCTTGTGCAGATGCTCACAAAGCTTCCCACAGTAGGAGGAGATACTCTTCGTAAACGGTACAAAATTGATGTAGATAGTCAAAATGGTAAAATATTCATAGAGAAGCTTGCAGTTCGAATATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGGTAAGTTTGGTTGGACGGCACTGGAGAGGCCCTCTACGTGA 1074 0.4441 MSVQLSALWVPNSPSIPTNFLPNRGRFSIIGVGGPSSRDNGYGNPNGNLFDGFQGESDHWSDLDTDLYHWTKTLRPVQWFPGHIAKAEKELKAQLKLMDVVIEVRDGRIPMSTSHPQASNSMDIWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGKLGMGTMKLGRLAKELAADVNIKRRAKGLLPRAIRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLTKLPTVGGDTLRKRYKIDVDSQNGKIFIEKLAVRIFNGDVHQAAFRVLADFRKGKFGWTALERPST 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02107 357 Gene3D - 259 347 IPR023179 -
Vian2g02107 357 FunFam DAR GTPase 3 chloroplastic 77 254 - -
Vian2g02107 357 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 65 356 - -
Vian2g02107 357 PRINTS GTP1/OBG GTP-binding protein family signature 201 221 IPR006073 GO:0005525
Vian2g02107 357 PRINTS GTP1/OBG GTP-binding protein family signature 247 262 IPR006073 GO:0005525
Vian2g02107 357 FunFam Mitochondrial GTPase 1 259 347 - -
Vian2g02107 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 316 IPR027417 -
Vian2g02107 357 Gene3D - 77 254 IPR027417 -
Vian2g02107 357 CDD YlqF 79 254 - -
Vian2g02107 357 NCBIfam ribosome biogenesis GTPase YlqF 77 353 IPR019991 -
Vian2g02107 357 Pfam 50S ribosome-binding GTPase 201 289 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02107 Vian-Chr2 40859434 40863115 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02107 K19828 - gmx:100784201 642.499