Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02089 ATGAAGCTCGTCAGGTTTCTAATGAAGCTGAACAACGAAACCGTTTCGATTGAGCTTAAGAATGGCACTGTTGTTCACGGCACCATTACAGGTGTTGATATCAGTATGAATACACATTTAAAAACAGTTAAACTAACTCTGAAAGGGAAAAACCCAGTTACTTTGGATCATCTGAGTGTGAGAGGCAACAACATTCGTTATTATATCCTTCCTGATAGCTTGAATCTTGAGACATTACTGGTTGAAGAGGCTCCTAGGATCAAGCCTAAGAAGCCAACTGCTGGTACTGTATCTTATTTGAGTGACTCCAGAAGTAGATTGTTTTTCTCAGAGGCCCATTATGTTCAGGTTTACTGTTATCTTTGGATTTCTGGTTTTCAATGTTCTGATTTTATATGCAGGGAAGCCTTTGGGGAGAGGTCGGGGACGAGGGCGTGGACGCGGACGTGGTCGTGGCCGTTAAATTGCAAATTAACAGAATTTGTGGCCTTTGGTTGTACCTTTATTGTAGGAAATTTTTCTAATGAGTTTAAAGACGTTGTAGAAGTGCTGTTGACCAGTTAA 564 0.4078 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRIKPKKPTAGTVSYLSDSRSRLFFSEAHYVQVYCYLWISGFQCSDFICREAFGERSGTRAWTRTWSWPLNCKLTEFVAFGCTFIVGNFSNEFKDVVEVLLTS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02089 187 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 4 101 IPR027141 GO:0006396
Vian2g02089 187 SMART Sm3 5 70 IPR001163 -
Vian2g02089 187 SUPERFAMILY Sm-like ribonucleoproteins 4 91 IPR010920 -
Vian2g02089 187 Gene3D - 1 85 - -
Vian2g02089 187 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Vian2g02089 187 Pfam LSM domain 5 69 IPR001163 -
Vian2g02089 187 CDD Sm_D1 2 93 IPR034102 GO:0000387
Vian2g02089 187 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02089 Vian-Chr2 40641885 40645677 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02089 K11087 - jre:109010907 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02089 2 40641885 40645677 Vian2g02089 2 40641885 40645677 ECH