Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02077 ATGGCAAGTTTTATGTCACTCTTCTCCTTGTCACTGATTCCTTTCAATCAACACAAATTCCAAGCCAAAAGTTTTTGTTTTCACAAGCCCTTGATCCAAAGGAAGCACCACCAATTTGGATCGCAAAACCTCTTTTTCCCCTTTTTCCGAAACCCATCTTCGAAATTGTGTGCCACTTCACGATTGTCCATTGAGGAGACGGAGCAACAAGTCGGAACCTCGACCCGACCGGAAGACCTGAAAGGGGCGTTGGCTTATCTGTTTAGGACGGAAACTGGTGGAGGTTTGGTGAAAGTTTATGTCACAAAGAAAAAAGATAGGTATTTTGTTTACGTTGAGATTTCTTCGTTGGATGTGAATCATTGTGGTGAAAGTGAAACATTGGTGTTGTGTTGGGGTGTGTATAGGGGTGATGCATCTTGTTTTGTGGATATGGATTCGACGGGGTTGAGTGGGATTGCGGCAAAGCGGATGAATGTTAGTCCTTTGGTGCAAACTTCTGTTGGCAAGTTTGGAGTTGAGTTGGAATTTGATGCCAAATATGTTCCTTTGTACTTGTCATTTTTCTTGATGTCATCTTTGAATGCAGGGTTGGAGATTAGAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGGTTGCTTCCGGGTTACCCGAGTCCTTTGGGGCTCTCTTATTCTCCTGATGGCTCTGTGAATTTTTCTATTTTCTCGAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAAGGGTGTGGAGAAGCCTGCTTTGGAGGTTGATTTGGATCCCTATGTGAATAGGTCAGGTGACATGTGGCATGTCTCGCTTGAGAATGTCAAGAGTTTCGTGAGCTATGGTTTTCGCTGCAGAGGAGGTGTTCATAAGCAGAACAGAGGTGATAGTTCTGCTGAGCATGTTGTTTTGGACCCGTATGCTAAGATTGTCGCTAATTCTTGTCCTGGTGGTCTTGGACTAGTGCAGAATCTTGGATGGTTGAGAAAGGAACCTGCTTTTGACTGGGGTGATGATTTTCACCCAGATTTGTCCATGGAGGAACTGGTGGTTTACAGGTTGAATGTCAAGCGCTTCACACAGCATGAGTCAAGCCAACTTCCAAGTGGTTCAGCTGGAACCTTTACTGGTTTGGCTGAGAAGGTTCAGCATTTTAAAGATATAGGTGTGAATGCTGTTCTGCTGGAGCCGGTTTTCACATTTGATGAAAAAAAAGGACCATATTTTCCTTGCAATTTTTTCTCCCTGATGCACATTTATGGACCATCTGGTGGTCCTGAATCTACTATGGCCTCTATGAAAGAGATGGTTAAAATTATGCATGCCAATGGGATAGAAGTTCTTATGGAAGTAGTTTTCTCAAATACTGCTCAGATTGGTGCTCTACAGGGAATTGATGACTCATCCTACTATTTAGCAAATGGAGTTGGTGATTTGAAGATACGGAGTGCTTTGAACTGTAACTATCCTATAGTGCACAATTTGGTTCTGGACAGTCTGCGGCATTGGGTGACTGAGTTTCACATTGACGGCTTCTCTTTCATAAATGCTTCACACCTGCTGAGGGGATTTCATGGGGAGTACTTGTCTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTGCTCTCCAAGACTAAAATCATTGCAGATTGCTGGGATCCTCATGACATGGTAGCGAAGGAAATTCACTTTCCTCATTGGATGAGATGGGCTGAAATGAATGCAAAATTTTGTAATGATGTGAGGAACTTTTTAAGGGGTGAAAGTCTTCTTAGCGACCTTGCAACAAGACTCTGTGGGAGTGGAGACATGTTTTCTGACGGACGAGGCCCAACATTCTCTTTTAATTACATTGCCAAGAATTTAGGATTTTCTCTTGTAGACTTGGTTAGCTTCAACAGTGATGATGAATTGAGTTGGAATTGTGGAGAAGAAGGAGCCACTAACAACACCACTGTCCTTGAAACGCGACTCAAACAAATCCGTAATTTCCTCTTTGTCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGCCCACTCCTCTGGTGGTTCTCTTGCACACGATGACATAAAGCCCATCACTTGGAATACTTTGACAACAGGCTTTGGTAAACAAATCTCACAATTCATTTTCTTTATGAGTTCACTGAGAAAGAGGAGGAGTGATCTTCTTCAGAGAAGGAGCTTCTTAAAAGAAGAAAACATAGAATGGTATGGAAGTGATGGGGCTCCACCAAGATGGGAAGATCCATCATGCAAGTTCCTGGCCATGACTTTGAAGGCTGAAGTAGCAAAGTTCCCAGAGAGCTCTGGGGATCTATTTATTGCTTTTAATGCAGCTGATCACCCAGAAACTACAGTTTTACCCTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTTGACACAGCTCTTCCATTTCCCAGCTTTTTCTCAACCAGTGGTGAAATAGTCCCTGAGATGAGAGCAGGTCTCTTTACTTATAAAATGAAGTCTCACAGCTGCGTTTTGTTTGAGGCGTGTAATTATACCATTTAA 2580 0.431 MASFMSLFSLSLIPFNQHKFQAKSFCFHKPLIQRKHHQFGSQNLFFPFFRNPSSKLCATSRLSIEETEQQVGTSTRPEDLKGALAYLFRTETGGGLVKVYVTKKKDRYFVYVEISSLDVNHCGESETLVLCWGVYRGDASCFVDMDSTGLSGIAAKRMNVSPLVQTSVGKFGVELEFDAKYVPLYLSFFLMSSLNAGLEIRSHRRTNFCVPVGLLPGYPSPLGLSYSPDGSVNFSIFSRHAESVVLCLYDEKGVEKPALEVDLDPYVNRSGDMWHVSLENVKSFVSYGFRCRGGVHKQNRGDSSAEHVVLDPYAKIVANSCPGGLGLVQNLGWLRKEPAFDWGDDFHPDLSMEELVVYRLNVKRFTQHESSQLPSGSAGTFTGLAEKVQHFKDIGVNAVLLEPVFTFDEKKGPYFPCNFFSLMHIYGPSGGPESTMASMKEMVKIMHANGIEVLMEVVFSNTAQIGALQGIDDSSYYLANGVGDLKIRSALNCNYPIVHNLVLDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHDMVAKEIHFPHWMRWAEMNAKFCNDVRNFLRGESLLSDLATRLCGSGDMFSDGRGPTFSFNYIAKNLGFSLVDLVSFNSDDELSWNCGEEGATNNTTVLETRLKQIRNFLFVLFVSLGVPVLNMGDECAHSSGGSLAHDDIKPITWNTLTTGFGKQISQFIFFMSSLRKRRSDLLQRRSFLKEENIEWYGSDGAPPRWEDPSCKFLAMTLKAEVAKFPESSGDLFIAFNAADHPETTVLPLPPEGMSWYRLVDTALPFPSFFSTSGEIVPEMRAGLFTYKMKSHSCVLFEACNYTI 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02077 859 Pfam Alpha amylase, catalytic domain 379 463 IPR006047 GO:0005975
Vian2g02077 859 CDD E_set_GDE_Isoamylase_N 220 359 IPR044505 -
Vian2g02077 859 SUPERFAMILY (Trans)glycosidases 338 737 IPR017853 -
Vian2g02077 859 Gene3D Glycosidases 336 746 - -
Vian2g02077 859 Gene3D - 747 858 IPR013780 -
Vian2g02077 859 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 221 314 IPR004193 GO:0004553|GO:0005975
Vian2g02077 859 Coils Coil 727 747 - -
Vian2g02077 859 SMART aamy 359 734 IPR006047 GO:0005975
Vian2g02077 859 SUPERFAMILY E set domains 216 348 IPR014756 -
Vian2g02077 859 CDD AmyAc_plant_IsoA 351 739 IPR044096 GO:0019156|GO:0019252
Vian2g02077 859 PANTHER GLYCOGEN DEBRANCHING ENZYME 181 853 - -
Vian2g02077 859 Gene3D Immunoglobulins 207 323 IPR013783 -
Vian2g02077 859 SUPERFAMILY Glycosyl hydrolase domain 746 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02077 Vian-Chr2 40463065 40465644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02077 54 858 Glycoside Hydrolase AT1G03310 56.987 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02077 K01214 - gmx:100777953 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02077 2 40463065 40465644 Vian2g02077 2 40463065 40465644 ECH