LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g02074	ATGGGTAAGATTCTCCGAGAAACCGCCAAGCCGTCGGCGAATTCTTCATCGGCGTCCCCCTCTTCTGCGGCGCCCGCCACCACGTCTTCCACGTCGGTGACGGAGACGGTGAGAGGCTCGCACCAGTTCAAGATCACGGGCTACTCGCTCTCGAAGGGGATCGGGATTGGAAAGTACATGGCCTCCGACGTGTTTTCCGTTGGAGGGTACGATTGGGCGATTTATTTCTACCCCGATGGGAAGAGCGTGGAGGACAATGCGACCTACGTGTCGCTCTTCATCGCTCTGGCCAGCGACGGCACCGACGTTAGGGCGCTTTTCGAGTTAACCCTTTTGGATCAGAGTGGCAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACACTCGAAAGCGGGCCTTACACGTTAAAATACCGCGGTAGTATGTGGGGTTACAAAAGATTTTTTAAGAGAACAGCTCTAGAAACATCGGACTACCTTAAAGATGATTGTCTCTCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGTACGGAAGGTCCTAAAATCTATACGATTGCAATACCACCTTCTAGCATTGGCCATCAGTTTGGGCATCTACTTGAAAGTCGTAAAGGAAGTGATGTGAATTTTGAAGTGAACGGAGAAATTTTTTCTGCTCATAAATTGGTATTAGCAGCTCGGTCACCTGTTTTTAGAGCACAGCTTTTTGGTCCTATGAAAGATCAGAATACCCAGTGTATTAAAGTTGAGGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATTTTATATACTGGGACTCACTACCAGATATGCATGAGCTTACTGGGTTGAACTCAAAGTGGGCATCAACCTTGATGGCTCAGCATCTTCTAGCAGCAGCTGATCGGTACGGCCTAGAGAGGCTTAGGCTGACGTGTGAAGCAAGTCTTTGTGAAGATGTAGCAATTAATACTGTGGCTACAACTTTAGCCTTGGCAGAGCAGCACCATTGTTTCCAACTGAAAGCTGTTTGTCTCAAGTTTATCGCTACTTCTGAAAATCTTAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTGGCCAGATTTACTGAGCATTCGGACTTCATGTGCAAGCATAGGAATGAAGCACTACTTGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTCTAG	1236	0.4782	MGKILRETAKPSANSSSASPSSAAPATTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASDGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPPSSIGHQFGHLLESRKGSDVNFEVNGEIFSAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMHELTGLNSKWASTLMAQHLLAAADRYGLERLRLTCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEALLDGSDINGRRVKQRL	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g02074	411	FunFam	BTB-POZ and math domain 1	184	311	-	-
	Vian2g02074	411	Gene3D	Potassium Channel Kv1.1; Chain A	184	311	IPR011333	-
	Vian2g02074	411	MobiDBLite	consensus disorder prediction	9	35	-	-
	Vian2g02074	411	FunFam	BTB-POZ and math domain 1	317	394	-	-
	Vian2g02074	411	Pfam	BTB/POZ domain	200	315	IPR000210	GO:0005515
	Vian2g02074	411	ProSiteProfiles	MATH/TRAF domain profile.	38	172	IPR002083	GO:0005515
	Vian2g02074	411	ProSiteProfiles	BTB domain profile.	208	267	IPR000210	GO:0005515
	Vian2g02074	411	PANTHER	BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1	27	375	IPR045005	GO:0016567
	Vian2g02074	411	SUPERFAMILY	POZ domain	185	315	IPR011333	-
	Vian2g02074	411	Gene3D	-	317	393	-	-
	Vian2g02074	411	CDD	MATH	39	172	IPR002083	GO:0005515
	Vian2g02074	411	SMART	math_3	43	155	IPR002083	GO:0005515
	Vian2g02074	411	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	37	176	IPR008974	GO:0005515
	Vian2g02074	411	CDD	BACK_AtBPM-like	314	377	IPR034090	-
	Vian2g02074	411	CDD	BTB_POZ_BPM_plant	194	314	-	-
	Vian2g02074	411	SUPERFAMILY	TRAF domain-like	35	174	-	-
	Vian2g02074	411	SMART	BTB_4	208	317	IPR000210	GO:0005515
	Vian2g02074	411	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g02074	Vian-Chr2	40434536	40438909	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g02074	K10523		-	gmx:102668882	747.273

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian2g02074	2	40434536	40438909	Vian2g02074	2	40434536	40438909	ECH
	Vian2g02074	2	40434536	40438909	Vian3g01912	3	22504874	22511323	PCT