Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02062 ATGAGACCGAAATTAATCCCTTACTTCGATTCAAGCCTTTCAAAAGCTGCCTCCTTTATCGGTCACCGAGGCAGTATTGCTGTTCGACAAAGGGTATTCCCTCCTAGACCTGAAGTGAACAAGATCCTATGGTTTCTCTATGCTGACGATACAACTACTACTAAATGTGGCTTGAAAGTCATGGCTGCTTCCACATACCCTTTGCAAAGCGGTAATGCTACCCCTCAGCAACTTGCTGCTTTTTCCAGTCCCCTAGAAGTGATTCTTGGATCTCATGTTGAGCATCAAATGTACTGCCACCTTCTATGTGGCCTTAGGAATCTTGATGTTATAGATGGAATCACAACCCCGTATGCTATAGGCTTGATCAAAGCATTTGGTCTTCTGGAGTCCAAGTGGGGGCAACTGTGTGATGATCTTGACCATGGATTTCCGTGTAATGAAATTTCTGAGGGGCCAATGAGGGAAGCTGTGACTAAGACACTTGGTGGACCTCAGCCAGAATTGGCAAATAGAATAAGATTAGTCTGTGAAGGTAACAACTGGGGTGGAATTGTGTGTAGATTGTGGCCGAACACTCGTTATATCAGGTGTGTTACCACAGGAAGCATGAAGCAATACTACCAAAAGATCAAATACTATGCAGGAGAGGTACCTATTTTAGGAGGAGATTACTTTGCTTCAGAATGCTGTGTTGGTTTAAATTTGGACATGATGCAACCCCCTGAGACAACACGATTTGTGATATTTCCAACTTTTGCCTACTTTGAGTTTCTTCCATTTAACACGAATGAGGACAATGTTAGCAAAGAAACAGTGGACCTTTGCAGTGTGGAGGTTGGGAAGATGTATGAAGTGGTTGTTACTACTTACAGAGGATTTTATCGCTACCGTTTGGGCGATATAGTGAGAGTTGTTGGTTTCCATAACTCATCTCCAGAAGTTGAGTATGTGATGAGAGCACCTAAAAATCCTGCTGAGATTGTGACTGAGAAAGACTTGATTTCAGCTGTTGAAAAATTTCAACTTTCACTTAGAGATGCTATGAATATTGAGATTGTTGAGTATGCAAGTTTCTTGTTCCAGGAGTCACTGCAGAAACAGTTGAAGGTATTTGTGGAAGTTCAAGATGAATCTAATTTTCTGGAGGACGAGCTAGAGGAATCAATTAAAGTTTTTAGAAGTTGTATGTCCACTCTCGAGAGTGGCTTGGGAGCTATATACAAGGTCCAGAGGGATAAAGGTCAACTAAGAAATTTACTATTGTTCATAGTAAGGTCTGGAGCTTTTGATCAACTATCAGACTTAGCCATTCAGAATGGAACATCAGCTAGTCAATATAAACCACCCAAGATTATAAGGAATCATGAAGTTGTTAAACTCTTGCAAAATTTAGCCATTGTGACAGTGTCGTTTGATGTTTAA 1425 0.4098 MRPKLIPYFDSSLSKAASFIGHRGSIAVRQRVFPPRPEVNKILWFLYADDTTTTKCGLKVMAASTYPLQSGNATPQQLAAFSSPLEVILGSHVEHQMYCHLLCGLRNLDVIDGITTPYAIGLIKAFGLLESKWGQLCDDLDHGFPCNEISEGPMREAVTKTLGGPQPELANRIRLVCEGNNWGGIVCRLWPNTRYIRCVTTGSMKQYYQKIKYYAGEVPILGGDYFASECCVGLNLDMMQPPETTRFVIFPTFAYFEFLPFNTNEDNVSKETVDLCSVEVGKMYEVVVTTYRGFYRYRLGDIVRVVGFHNSSPEVEYVMRAPKNPAEIVTEKDLISAVEKFQLSLRDAMNIEIVEYASFLFQESLQKQLKVFVEVQDESNFLEDELEESIKVFRSCMSTLESGLGAIYKVQRDKGQLRNLLLFIVRSGAFDQLSDLAIQNGTSASQYKPPKIIRNHEVVKLLQNLAIVTVSFDV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02062 474 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 2 466 IPR004993 -
Vian2g02062 474 Pfam GH3 auxin-responsive promoter 2 456 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02062 Vian-Chr2 40350002 40351511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02062 38 469 EF-hand Containing Proteins AT1G23160 32.353 2.14e-76 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02062 K14487 - gmx:100786829 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02062 2 40350002 40351511 Vian2g02062 2 40350002 40351511 ECH