Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02052 ATGAAGCGAGTGTGGAGATTCTCTTCACACGCAACCGGTGTTCAGTTGTTACTCTTCCAATCCCACTTCAGTGGATTCTCCAAACCCAAACACATTCCCTCCTTCTCCACCGTGCTATCTTATCGCCAGCTCAACACGGTGTCAGACTCGTTCTCTCACCTCATTCCATTGTTCACCGTCAATGCTTGTTCTTCAACTTCAACCAAAGAGGATCTCATCAACAACGTCACTATTCTTAGGAATGAACTAATTCGGGATTCCTCCGACCATGTTCAGGTTCAAAGCATTTTGGACTATAAGTATGACGATCTCAGTAGCCGCTACCCCAAGGGATATGTGTTCTTGGAACTTATGTATCAATTGAAATCAAATTCTTCTCTTGCTCTTAAGGTGTTTAACTGGAGAAGGAAAAGATGTAGTGCTGAAAACCCTATGGATACGAATGAGTACTCAAAGGGTATAATAGCTGCAGGTAGATCTGGGAATATTCATTTTGCTATTAAGCTCTTTAAGGAGGCTGCTACCAAAGGTGTCAAGACGACTAGCACTTACAATGCGCTAATGAGTGCCTTCTCGGTCAATGGTCTTGCTGATTGCTGTCAGTCCTTGTTTTGTGATCTGAAGAGGGATTCAACTTGCGATCCTTCTATTGTCACATACAACATTCTCATATCTAGTTTTGGTAGCTTGATGCTGGTTGATCACATGGAAGCAACATTCCGTGAGATTCGAAAGTTAGACCTTGCCATGAATATCAGCACTTATAATAACTTAATTGTTGGATATATCACAGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGAAGTCGAGCCCTGTCCAGCCTAACATGAAAACCTACCTGCTAATGCTTCGTGGGTATGCAAATTCAGGTAACCTGGAAAAGATGGAAGATACGTACTCCATTGTAAGGGATCATGTAAATGAACATGAAATTTCATTAATCAGAAGTATGATATGTGCCCATTATAGAAGTTCTGAAGCAGATAAACTTAAGAAGATAGAGTTGCTATTGAAGTTTATTCCAGAAGAGGAGTACAAACCATGGTTAAATGTGTTGATGATTAAACTCTATGCCAAGGAAGACTTGTTAGAGAAGATGGAGAATGCTATAAATAAGGCATTTGAACATGGACCATCTATTAGAAGCATGGGTATCTTGAGATGCATTGCTGCAACTTATTATCGGTGCAATGCTGTAGAAAAGCTAGAAAATTTTGTGAGACGTGCTGAAATCTCTGGGTGGAGTACCTGCCGCTCCTTATATCATTGTAAACTGGTCATGTATGGGTCACAGAAGCCCTTACATGAATTGTATCGTGTCCTTGAGGGGATGGAAAATGCCAAACTTGCTTGTACGAAGAAAACATTATGGATAATGCACAAAGCTTACAGCAACCGTGGCCAGAGTCCCATGGTTTTGAAAACACTGGGGCTAATGTTCAAACATGGTTACGAATTTCCTTTGGACGCAATTCCATCATAA 1515 0.4086 MKRVWRFSSHATGVQLLLFQSHFSGFSKPKHIPSFSTVLSYRQLNTVSDSFSHLIPLFTVNACSSTSTKEDLINNVTILRNELIRDSSDHVQVQSILDYKYDDLSSRYPKGYVFLELMYQLKSNSSLALKVFNWRRKRCSAENPMDTNEYSKGIIAAGRSGNIHFAIKLFKEAATKGVKTTSTYNALMSAFSVNGLADCCQSLFCDLKRDSTCDPSIVTYNILISSFGSLMLVDHMEATFREIRKLDLAMNISTYNNLIVGYITAWMWDDMEKVFQMLKSSPVQPNMKTYLLMLRGYANSGNLEKMEDTYSIVRDHVNEHEISLIRSMICAHYRSSEADKLKKIELLLKFIPEEEYKPWLNVLMIKLYAKEDLLEKMENAINKAFEHGPSIRSMGILRCIAATYYRCNAVEKLENFVRRAEISGWSTCRSLYHCKLVMYGSQKPLHELYRVLEGMENAKLACTKKTLWIMHKAYSNRGQSPMVLKTLGLMFKHGYEFPLDAIPS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02052 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vian2g02052 504 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Vian2g02052 504 Gene3D Tetratricopeptide repeat domain 246 316 IPR011990 GO:0005515
Vian2g02052 504 Gene3D Tetratricopeptide repeat domain 72 245 IPR011990 GO:0005515
Vian2g02052 504 PANTHER EXPRESSED PROTEIN 47 502 IPR044179 GO:0003729
Vian2g02052 504 Pfam PPR repeat family 251 299 IPR002885 -
Vian2g02052 504 Pfam PPR repeat family 180 227 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02052 159 343 Miscellaneous Gene Families AT4G11690 23.834 2.50e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02052 - - gmx:100792116 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02052 2 40255563 40257422 Vian2g02052 2 40255563 40257422 ECH