Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01978 ATGAAGAACCCACTTATCTTCCTCATATTCCTACTTCTCACCCAATCCCTTCTCGCCACGTCATCACCGTTAAACCTGATCCCAATCAACCTCTCCGTCGCCGACTTCGGCGCCACCGGCGACGGTAGCTGCTACGATACCGAACCGATCCAGTCGGCCATCAACTCCTGTCCGGAGGGCGGTCCCTGCCACGTCATCTTCCCGGCGCCGGGAAAGTACCTTACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTGGTTGTGGAGCCTGGTGCTACCATCCTGGGCGGCGCCAGGCTTGAGGACTACCCGAAGGAGTTCTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGAACGTGGGAATCCGCGGCGGCGGAGTGGTGGACGGTCAGGCTAGGAAGTTCGTAGTGAGGGAAGATCCGAGGAAGAACGTGATGGTTAGTTGGAACCAAACTGGGGCTTGCTTGGGAGACGAATGCAGACCTAGACTCATTGGATTTATTGGTTGCAACAATGTTGAAGTTTCTAACATCACTCTCAACCACCCTGCTTATTGGTGCTTACACTTGGTCCGGAGTAATAACATATCCATTAAAGATATTGCAATTAATGGGGACTTTAACATACCAAACAATGACGGGATTGACATTGAGGACTCAAACAACACAGTAATCACTCGATGCCACATCGATACCGGGGATGATGCAATCTGTCCAAAGACATACACATGTCCTGTTTACAACCTTACAGTCACCGATAGTTGGATTCGATCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATCATTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGCAAGTGACATTGTATTCTCAAACATTAATATCAGCACAAGATATTATGACCCGTTATGGAACAAAAGTCGCTTCGACAAGAAAACACAAAAAGTTGCAACAAAGGTTGATAGCTCAATTATCTTAAATCATACCAAAGAAAAAGACAAAAAGTCTGACAATGATACGATGAGTGACTTCTCACATCAAATTGAGGAAGTCAAAGGCAAGAAACTGTCACATCCACCGAACTAA 1134 0.4709 MKNPLIFLIFLLLTQSLLATSSPLNLIPINLSVADFGATGDGSCYDTEPIQSAINSCPEGGPCHVIFPAPGKYLTATVFLKSGVVLVVEPGATILGGARLEDYPKEFWRWYVVVAENATNVGIRGGGVVDGQARKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFIGCNNVEVSNITLNHPAYWCLHLVRSNNISIKDIAINGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTCPVYNLTVTDSWIRSKSSAIKLGSASWFDFKHFVFDNIIIVDSHRGIGFQIRDGGNASDIVFSNINISTRYYDPLWNKSRFDKKTQKVATKVDSSIILNHTKEKDKKSDNDTMSDFSHQIEEVKGKKLSHPPN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01978 377 PANTHER PECTIN LYASE-RELATED 26 323 - -
Vian2g01978 377 Pfam Glycosyl hydrolases family 28 111 315 IPR000743 GO:0004650|GO:0005975
Vian2g01978 377 MobiDBLite consensus disorder prediction 345 377 - -
Vian2g01978 377 SUPERFAMILY Pectin lyase-like 9 318 IPR011050 -
Vian2g01978 377 Gene3D - 16 368 IPR012334 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01978 29 320 Glycoside Hydrolase AT3G57790 70.234 4.78e-147 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01978 - - gmx:100794954 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01978 2 39375883 39379944 Vian2g01978 2 39375883 39379944 ECH