Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01950 ATGACTGTCACTCCTAAGATCTCCGTCAACGATAAGAAATTGGTTGTTCATGGCAAGACCATATTAACCGGAGTACCGGACAACATTGTGCTGACTCCAGGATCTGGAAGTGGCCTAGTGACTGGTGCTTTTGTTGGTGCTACTGCTTCTCACAGCAAAAGTCTCCATGTCTTTCCGATGGGTGTCTTGGAGGAGCTCCGGTTCATGTGTTGCTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACATGTGGGAGGGATGTTCCACTGGAGACACAGTTCATGCTGATTGAGAGCAAAGAGAGTGAAGTGGATGGAGAGAATTCTCCAATCATCTACACTGTCTTTCTTCCTCTTCTCGAAGGTCCATTCCGAGCTGTTCTTCAAGGCAATGACAAGAACGAGATAGAGATTTGCCTCGAGAGTGGGGATAACGCTGTTGAGACTGATCAAGGCCTTCACCTAGTTTACATGCATGCTGGGACCAACCCCTTTGAAGTCATCAATCAAGCAGTGAAGGCTGTGGAAAAACACATGCAAACTTTTCTTCACCGTGAGAAGAAAAAGTTGCCGTCTTTTCTTGACTGGTTTGGTTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGGAAGGCCTGAAAAGTCTATCTGCGGGAGCTACACCACCACGGTTCCTAATCATAGATGATGGCTGGCAAGAGATTGAAAGTAAACAAAATGAGGTTGACTGTGTTGTACAAGAAGGGGCACAGTTTGCTACTAGGCTGACTGGTATTAGAGAGAATACTAAATTTCACAAGAAAACACACAACAATGAGCAGACATCAGGTCTGAAGCATTTAGTAGAAGGAGTAAAGCAGCATCACAACGTGAAAAATGTTTATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTGAAACCAGCAGCAACTGGCATGGAGCATTATGACACTGCCTTGGCATATCCAGTGCAGTCACCAGGTGTGCTTGGAAACCAACCAGACATTGTCATGGACAGCTTGGCCGTACATGGCCTAGGCCTAGTGCACCCAAAGAAGGTTTTCAACTTCTACAATGAGCTTCATGCTTACTTGGCTTCTTGTGGAGTGGATGGAGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCTGGACATGGTGGAAGAGTCTCTCTTACACGAAGCTATCATCACGCCCTTGAGGCTTCCATTAGTCGTAACTTCACTGAGAATGGATGCATTGCTTGCATGTGTCACAACACTGACGGCCTTTACAGTTCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGATTTCTACCCTCGTGATCCTGCTTCCCACACCATCCATATTTCTTCTGTTGCATACAACTCACTTTTCCTTGGAGAATTCATGCAACCAGATTGGGACATGTTTCATAGTTTACATCCTGCAGCAGAATATCATGCTGCAGCTCGTGCAATTGGTGGATGTCCAATTTATGTGAGTGACAAGCCAGGCAACCACAATTTTGATCTTCTTAAGAAGCTGGTTCTTCCTGATGGTTCGGTTCTCCGAGCACAATTACCAGGGAGGCCAACTCGTGATTCTCTGTTTGTTGATCCAGCCAGAGATGGGACTAGCTTGCTCAAAATCTGGAACATGAACAAATGTTCTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCTGGGTGGTGCAAGTTAGAGAAGAAAACTCGCATCCATGATACATCTCCCGGTACACTAACTGGCTCTGTCTGTGCCTCTGATGTTGACCTTATCACCCAAGTAGCAGGTCCTGAATGGCTTGGAGAGACTATTGTTTATGCTTACAGATCAGGTGAGGTGATTCGGCTATCAAAGGGGGTTTCTGTTCCGGTGACACTGAAAGTTCTTGAGTTTGAACTTTTCCATTTCTGTCCAATCCATGAAATAGCACCAGGTATTTCATTTGCAGCGATAGGGCTACTTGATATGTTCAACACTGGAGGAGCTGTGGAGCTGGTTGAAATTCACAGAGCCTCTAACAACAAACCAGAACTGTTTGATGGTGAGGTGTTATCAGAATTAACCTGTTCTCTGAGTCCTAACCGAGCAGCAGCAGCAACTGTTTCTCTTAGAGTCAGGGGAAGAGGCAGGTTTGGAGTTTACTCCTCTCAACGCCCAGTGAAGTGTGTAGTAGATGGCTCTGAAACAGACTTCAACTATGAGTCAGAGAGTGGGTTGGCAACCTTCTCCATCCCAGTTCCTCAAGAGGAGATGTATAGATGGGCAATAGAGATCCAAGTTTGA 2322 0.4599 MTVTPKISVNDKKLVVHGKTILTGVPDNIVLTPGSGSGLVTGAFVGATASHSKSLHVFPMGVLEELRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDGENSPIIYTVFLPLLEGPFRAVLQGNDKNEIEICLESGDNAVETDQGLHLVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKSLSAGATPPRFLIIDDGWQEIESKQNEVDCVVQEGAQFATRLTGIRENTKFHKKTHNNEQTSGLKHLVEGVKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASISRNFTENGCIACMCHNTDGLYSSKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKLEKKTRIHDTSPGTLTGSVCASDVDLITQVAGPEWLGETIVYAYRSGEVIRLSKGVSVPVTLKVLEFELFHFCPIHEIAPGISFAAIGLLDMFNTGGAVELVEIHRASNNKPELFDGEVLSELTCSLSPNRAAAATVSLRVRGRGRFGVYSSQRPVKCVVDGSETDFNYESESGLATFSIPVPQEEMYRWAIEIQV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01950 773 Pfam Raffinose synthase or seed imbibition protein Sip1 7 756 IPR008811 -
Vian2g01950 773 Gene3D Aldolase class I 197 520 IPR013785 -
Vian2g01950 773 PANTHER - 1 771 IPR008811 -
Vian2g01950 773 SUPERFAMILY (Trans)glycosidases 195 525 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01950 Vian-Chr2 38962204 38966119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01950 1 556 Glycoside Hydrolase AT3G57520 81.329 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01950 K06617 - gmx:100807861 1418.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01950 2 38962204 38966119 Vian2g01950 2 38962204 38966119 ECH