Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01932 ATGGCCACCACCGCAACTCACTGTCTCCAACTCGCCGGCGCCACCGTGTCCACTCACCGAAGAACTTCCGTTTCCTGCAAGAAGAAATCGGATAAGATTGCATTCAAGGAAACGAAAGAAGGCTTCGTCGACTACGACCGAGGCCTGCACGACGTCTCCACCAAAATCTCCGGCCTCCGCAAGGACAACATCGCCACCCGCTACCGCGTCCGCGTCGCCGGAAACCGCTTCCAGAAGGACTGGACAGTTTCCGAGGTCGCCGACCTCGTCCTCTCACTCGACCTCTCCGACGACATCGATGGCCTACTCAACCGTTGGATAGGCCGCTTCGCACGCAAGAATTTCCCCTACCTCATTAAGGAGTTGACGCAGCGAGGGTCCATTGAACATTGTAATCGCGTGTTCAGGTGGATGAAGTTACAGAGGAACTACTGTGCGCGTAATGATATATACAACATGATGATTAGGTTGCACGCTCGTCACAACCGAACGGACCATGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCGGATGTTGAGACTTACAATGCTCTTATCAACGCACATGGTCGAGCTGGACAGTGGCGTTGGGCTTTGAATATCATGGATGACATGCTGCGTGCAGCTATACCGCCGAGTAGGTATACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTCAGCGTTTGCAAGAAAATGACAGACAACGGTGTTGGGCCCGATCTTGTTACTCATAATATTATTCTGTCTGCATTTAAAAGCGGTGCTCAGTATTTGAAAGCTCTGTCATATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACCACACTTAATATTGTTATCCATTGTCTAGTAAAGCTTCAACAATATGACAAAGCTATAGATATTTTTAGTTCCATGAGGGAGAAGAAATCAGAATGTACCCCTGATGTTGTTACATTCACAAGTATCATTCACTTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAAGCTGCATTTAATATGATGCTTGCAGAAGGGCTGAAACCTAATATAGTCTCATATAATTCACTGATAGGTGCATATGCTGCTTGTGGGATGGACAATGAGGCACTTTTGGTTTTCAATGAGATAAAAAGAAATGGTTTCCGCCCTGATGTTGTATCGTATACGTCTCTCCTTAATGCTTATGGAAGGTCACAAAAACCCCAAAAAGCAAGGGAAATATTTGATATGATGAAGAGAAACAAGTTGAAGCCAAACCTTGTCAGTTACAATTCACTTATTGATGCCTACGGATCTAGTGGTTTTCTGACAGATGCAATTGAAGTCTTGCGAGAAATGGAAGAAGATGGAATTCAACCAAATGTTGTTTCAATATGCATACTCTTGGCTGCATGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAGTCCTAACAGCTGCTAAGATGAGAGGAATTAAGTTAAACACCATTGCATATAATTCAGCTATAGGAAGCTATATGAATGTAGGGGAATATGACAAAGCTATAGACTTGTACAAATCTATGACCAAGAAAAAAATTAAAACTGATACTGTTACCTACACTGTGTTGATTAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCTTCTGTCATATGTGCCTATAGCAAACAGGGCCAAATTGAAGAAGCAGAGTCTACATTTGACTTGATGAAATCATCTGGTTGTTACCCTGATGTGGTTACATACACCTCCATGCTTGATGCTTACAATGCAGCTGGGAATTGGGAGAAAGCTTATGCACTCTTTGATGAAATGGAAGCAAGTGACATCAAGCTAGATACCATTGCCTGTGCAGCCCTAATGAGATCTTTTAATAAAGGTGGTCAACCGGGAAGGGTTCTTAGTCTAGCACAAAGCATGAGAGAAAAAGAAATTCCTTTCACTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGACATGATCAAGTACATAGAGCCCTCACTTCCTCTAATTTCATCCGGATGTTTGAATCAGTTGCTGCATGCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCGTCAGGTATTGATGTTAACTTAAACACTTACTCTATTTTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGACGCAGGCATTCATCCATCAAATGAAATGTTCCATGATATATCTTCGTTTTCACAAAAATGCTGTGGGCACGAAAATGCTGCTGTTATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCTGAGGATCAAATTTCTTCCAGCCGACCAGGTGAAACTCCGGTTCTTAGTTGA 2490 0.4197 MATTATHCLQLAGATVSTHRRTSVSCKKKSDKIAFKETKEGFVDYDRGLHDVSTKISGLRKDNIATRYRVRVAGNRFQKDWTVSEVADLVLSLDLSDDIDGLLNRWIGRFARKNFPYLIKELTQRGSIEHCNRVFRWMKLQRNYCARNDIYNMMIRLHARHNRTDHARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWALNIMDDMLRAAIPPSRYTYNNLINACGSSGNWKEALSVCKKMTDNGVGPDLVTHNIILSAFKSGAQYLKALSYFELMKGTHIRPDTTTLNIVIHCLVKLQQYDKAIDIFSSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMLAEGLKPNIVSYNSLIGAYAACGMDNEALLVFNEIKRNGFRPDVVSYTSLLNAYGRSQKPQKAREIFDMMKRNKLKPNLVSYNSLIDAYGSSGFLTDAIEVLREMEEDGIQPNVVSICILLAACGRCSRKVKIDTVLTAAKMRGIKLNTIAYNSAIGSYMNVGEYDKAIDLYKSMTKKKIKTDTVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEVYSSVICAYSKQGQIEEAESTFDLMKSSGCYPDVVTYTSMLDAYNAAGNWEKAYALFDEMEASDIKLDTIACAALMRSFNKGGQPGRVLSLAQSMREKEIPFTDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPLISSGCLNQLLHALGKSGKIETMLKLFFKMLASGIDVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNEMFHDISSFSQKCCGHENAAVIKERLESLKRKSEDQISSSRPGETPVLS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01932 829 Gene3D Tetratricopeptide repeat domain 385 458 IPR011990 GO:0005515
Vian2g01932 829 Gene3D Tetratricopeptide repeat domain 565 638 IPR011990 GO:0005515
Vian2g01932 829 Gene3D Tetratricopeptide repeat domain 459 564 IPR011990 GO:0005515
Vian2g01932 829 Gene3D Tetratricopeptide repeat domain 268 382 IPR011990 GO:0005515
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vian2g01932 829 FunFam Os07g0213300 protein 264 378 - -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 743 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vian2g01932 829 SUPERFAMILY TPR-like 287 662 IPR011990 GO:0005515
Vian2g01932 829 Pfam Pentatricopeptide repeat domain 322 370 IPR002885 -
Vian2g01932 829 Pfam Pentatricopeptide repeat domain 447 476 IPR002885 -
Vian2g01932 829 Pfam Pentatricopeptide repeat domain 382 441 IPR002885 -
Vian2g01932 829 Pfam Pentatricopeptide repeat domain 732 779 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Vian2g01932 829 FunFam Pentatricopeptide repeat-containing protein isoform A 459 565 - -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 185 217 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 219 252 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 254 288 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 502 534 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 396 429 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 361 395 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 150 183 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 290 321 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 572 605 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 536 566 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 431 465 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 606 640 IPR002885 -
Vian2g01932 829 NCBIfam pentatricopeptide repeat 714 744 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Vian2g01932 829 FunFam Pentatricopeptide repeat-containing protein At2g41720 652 829 - -
Vian2g01932 829 FunFam Pentatricopeptide repeat-containing protein At2g41720 85 245 - -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Vian2g01932 829 Pfam PPR repeat family 499 547 IPR002885 -
Vian2g01932 829 Pfam PPR repeat family 572 615 IPR002885 -
Vian2g01932 829 Pfam PPR repeat family 181 228 IPR002885 -
Vian2g01932 829 SUPERFAMILY TPR-like 182 313 IPR011990 GO:0005515
Vian2g01932 829 Pfam PPR repeat 150 179 IPR002885 -
Vian2g01932 829 Pfam PPR repeat 290 317 IPR002885 -
Vian2g01932 829 Gene3D Tetratricopeptide repeat domain 652 821 IPR011990 GO:0005515
Vian2g01932 829 Gene3D Tetratricopeptide repeat domain 112 267 IPR011990 GO:0005515
Vian2g01932 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Vian2g01932 829 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 357 561 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01932 431 784 Glycosyltransferase AT1G05670 24.615 1.19e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01932 - - gmx:100814643 1486.09