Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01901 ATGGTGTCAAAACCTGGTGGCTTGTATGAACAAGGGAGCTTTCCATCAATCAAAATCCTCATACTTTTACTCCTTCATTCTATACTTCACAAAGCCAACTCAGGCTGCAACAATAACTCTTCTTCAAGTTCCTTGCTTCCATTTCCACCTCATGAGATTCTCTCATCATTGCAAACACTTCCTCTAGATGGCTACTTTAGCCTAAGTAACAATGAGGATGCTGCCAAGGACTTTGGCAACATACACCATTTTCCTCCCCTAGCAGTGCTGCATCCAAAAACAGTTTCTGATATATCACGAACCATAAAGCATGTTTTTGAAATGGGGTTTGCCTCAGAGCTGAAGGTTGCTGCCAGAGGCCATGGCCATTCCCTGCAAGGCCAGGCACAGGCAAATGGGGGTCTAGTCATTAACATGGAGTCTCTGCAGGGTCCTGAAATGAAAGTTCACGTTGGAGAGTTCCCTTATGTGGATGTCTCAGGGGGAGAGTTGTGGATAAACATTCTGCATGAAACTCTTAAACATGGGTTGGCACCAAAGTCATGGACAGATTACCTTCACCTCACTGTTGGAGGCACACTTTCAAATGCTGGTATAAGCGGCCAAGCCTTCAAACATGGACCTCAGATCAATAACATCTTTCAGCTTGAAGTGATCACAGGAAAAGGAGAGGTGGTTACCTGCTCAGGGAACCGAAATGCTGACCTTTTTCATGGTGTACTTGGAGGGCTTGGTCAATTCGGTATCATCACAAGGGCTAGAATTTCTCTTGAAACAGCACCAAAGATGGTGAAATGGATTAGAGTGCTCTACTCAGAATTCTCTATATTTACTAGGGATCAAGAGCATTTAATATCACTAAAAAACACATTTGATTATATTGAAGGGTTTGTGATCATAAACAAAACTGGCATCCTTAACAATTGGAGATCATCCTTTGACCCCAAAAGTCCACTTCAAGCTAGCCAATTCAATTCTGATGGAAGAACCTTTTACTGTCTTGAGATGGCAAAATACTTCAACCCTGATGAAGCAGAACTCATGAATCAGAATATTGATCATCTATTATCAAAGCTGAGTTACATCCAACCAAGTCTCTTCAGATCAGAAGTTTCTTACGTGGAATTCCTAGACAGAGTGCATGTTTCTGAGAAAAAGCTAAGAGCAAAAGGCTTGTGGGAAGTCCCCCATCCCTGGCTGAACCTTCTGATCCCAAGAAGTGAGATTCATGACTTTGCTGAAGAAGTATTTGGCAAAATTCTTAAGGACACAAGTAATGGCCCCATACTCATTTACCCCGTCAACCAAACAAGGTACATACATGCATATGGCTTTTCAAACATGACTCAAACGAACCAGTTTAACTCTGTAGCTTTTCAGAGTTTGTCTTTTATGAGGGTCAATGAACATATCAAATATGGCAACTTGTAA 1431 0.4186 MVSKPGGLYEQGSFPSIKILILLLLHSILHKANSGCNNNSSSSSLLPFPPHEILSSLQTLPLDGYFSLSNNEDAAKDFGNIHHFPPLAVLHPKTVSDISRTIKHVFEMGFASELKVAARGHGHSLQGQAQANGGLVINMESLQGPEMKVHVGEFPYVDVSGGELWINILHETLKHGLAPKSWTDYLHLTVGGTLSNAGISGQAFKHGPQINNIFQLEVITGKGEVVTCSGNRNADLFHGVLGGLGQFGIITRARISLETAPKMVKWIRVLYSEFSIFTRDQEHLISLKNTFDYIEGFVIINKTGILNNWRSSFDPKSPLQASQFNSDGRTFYCLEMAKYFNPDEAELMNQNIDHLLSKLSYIQPSLFRSEVSYVEFLDRVHVSEKKLRAKGLWEVPHPWLNLLIPRSEIHDFAEEVFGKILKDTSNGPILIYPVNQTRYIHAYGFSNMTQTNQFNSVAFQSLSFMRVNEHIKYGNL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01901 476 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 86 121 IPR006093 GO:0016491
Vian2g01901 476 Gene3D - 139 262 IPR016169 -
Vian2g01901 476 PANTHER GULONOLACTONE OXIDASE 30 440 - -
Vian2g01901 476 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 261 441 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vian2g01901 476 ProSiteProfiles PCMH-type FAD-binding domain profile. 82 260 IPR016166 GO:0071949
Vian2g01901 476 SUPERFAMILY FAD-binding/transporter-associated domain-like 70 257 IPR036318 GO:0050660
Vian2g01901 476 Pfam FAD binding domain 86 229 IPR006094 GO:0050660
Vian2g01901 476 SUPERFAMILY FAD-linked oxidases, C-terminal domain 261 438 IPR016164 GO:0003824|GO:0050660
Vian2g01901 476 FunFam Cytokinin dehydrogenase 1 139 262 - -
Vian2g01901 476 Gene3D - 74 138 IPR016167 -
Vian2g01901 476 Gene3D - 264 459 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01901 Vian-Chr2 38055259 38057191 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01901 K00279 - gmx:100777568 770