Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01899 ATGTCTCTTTTGCCTCGTCTCCGTGTTTTCGCCACCCCTTTACTTTCATCTTCTCTCCTCTCCTCCTTCTCTCAGAATGGAGGTAGACAAATGATGACAAGAATTGGCATCAATACCTGCTCGCTTTCTTCCACAGCTGAAGCTTCAGATTTAGAATGTGATGTGACTCGTGATGATGTCAAAGCAGAAGAGAGAGCCAATGCACTTTGCATGGCTGTATCACAGCTTGCTAGTGAGTTTAGCAAGGAATCAATGTTGTCTCTGCAGAAATTTTTTGGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCCCTGGGAATAGGAGGATTGCCAAAGGGTAGAATTGTGGAAATTTATGGACGGGAAGCAGCTGGGAAGACTACACTTGCTCTTCAAATTATTAAAGAAGCTCAAAAACTTGGAGGATATTGTGCATATCTTGATGTTGAAAATGCTCTGGACTTCTCACTTGTGGAATCAATAGGTGTAAATACTGAAAACCTTCTCGTATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACACTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCATCCCCAAATGCGAACTTGATCAATTAGGAGTTAGTCCTAAACGAGATTATCAATCACGAATGATGACTCAAGCACTGCGGAAAATTCACTATTCATTATCTCACTCTCAAACTCTCATTATTTTCATTAATCAGATTAGATTGAGTTCAAAATCCGTCAAGGAACATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCTTTGAGATTCTATGCAGCCGTTCGTTTGAGACTTACAAGAATAAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATCTGTGCGCAAGTGGTGAAAAATAAACTAGCACCAGCAGCAACTAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGAGTTGGCCTGTGAACATGGAATCATTGTGAAAGATGAGGGAAGCTACATTATTGAGGGGGGGATTTTTGATAGTAGAGAAGCAGCTGAATTGTTTTTGGCTCACAATGATGCCATTTGTGACAAGTTGGTTAAGGATATGAGAAGACTTTATTTTTAA 1176 0.4099 MSLLPRLRVFATPLLSSSLLSSFSQNGGRQMMTRIGINTCSLSSTAEASDLECDVTRDDVKAEERANALCMAVSQLASEFSKESMLSLQKFFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKCELDQLGVSPKRDYQSRMMTQALRKIHYSLSHSQTLIIFINQIRLSSKSVKEHGSVEEVTCGGNALRFYAAVRLRLTRIRLIKTEDKVEGVLICAQVVKNKLAPAATKRAELGIKFGRGFCHESEVLELACEHGIIVKDEGSYIIEGGIFDSREAAELFLAHNDAICDKLVKDMRRLYF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01899 391 ProSiteProfiles RecA family profile 2. 266 337 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vian2g01899 391 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vian2g01899 391 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vian2g01899 391 PANTHER RECA 43 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 CDD RecA 99 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 SMART AAA_5 118 298 IPR003593 GO:0016887
Vian2g01899 391 Gene3D - 95 388 IPR027417 -
Vian2g01899 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 320 IPR027417 -
Vian2g01899 391 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 PRINTS RecA protein signature 361 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian2g01899 391 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01899 Vian-Chr2 38008657 38014015 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01899 - - var:108318700 680.633