Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01856 ATGCTTTCTTCTGCAATTTCTCTGAAGCCCTTCCTTCAGTCACTCATCATTGATCGTTATGCCCAGAGCTCGACTGCTGCGACCAGGTGGGAGTGTTTGGGGTTTAACAAGTCAGAAAATTTCAGTACCAAGAGAGTGTTGTCTACTGAGGGGTTCAAGCTGTGTTGCTTGGTTGATAACAGAGAGATGGAGGTGGAGTCGTCATCCTCATCTTTTGTGGACGATGCTGTCGTGAGCTTAAGTGAAGAGGATTTAGGGGAGCCTAGTATCTCTACAACAGTGATGAATTTTGAGAACAAGTTTGATCCTTTTGGAGCAATTAGCCCCCCACTTTACCAAACTGCTACTTTTAAGCAGCCTTCTGCAATAGAAAACGGTCCCTATGACTATACTAGAAGTGGAAATCCTACTCGGGATGCTTTAGAAAGTTTACTGGCAAAACTTGATAAAGCAGATAGAGCCTTGTGCTTCACCAGCGGAATGGCTGCTTTGACTGCTGTTGTTCATCTCATTGGAACTGGTGAGGAAATTGTTGCTGGAGATGATGTATATGGGGGCTCAGATAGGTTGCTGTCTCAAGTAGTTCCAAGGACTGGAGTTGTGGTGAAACGGATAAATACAAGTGATCTGAATGAGGTTGCATCTTCCATTGGACCCAAGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGGCTACAAATTTCTGATATTCGAAAAATAGCAGAGATGGCTCATTCACATGGTGCTCTTGTTTTAGTGGACAATAGTATCATGTCACCTGTATTGTCACGGCCATTAGAACTTGGAGCAGATATTGTCATGCACTCAGCTACAAAATTTATTGGTGGACATAGTGACATTATGGCTGGTGTGCTTGCTGTGAAGGGTGAAAAGTTGGGAAAGGAATTGTATTTCTTGCAGAATGCGGAGGGTTCAGGCTTAGCCCCATTTGACTGTTGGCTTTGTATGCGAGGAATCAAGACAATGGCCTTGAGAGTAGAAAAGCAACAGGATAATGCACAAAAGATTGCTGAGTTCCTTGCCTCCCATCCTCGAGTGAAGAAAGTGAATTATGCTGGCTTGCCTGATCATCCCGGTCGTGATTTGCATTATTCTCAGGCAAAGGGTGCAGGATCTGTGCTTAGCTTCTTGACTGGTTCACTGGCACTTTCAAGGCATATTGTTGAAACTACCAAATACTTCAGCATAACCGTCAGCTTTGGGAGTGTTAAGTCCCTTATCAGCATGCCATGCTTTATGTCACATGCAAGCATACCTTCTGCAATTCGTGAGGCCAGGGGGTTGACTGAAGATCTTGTACGTATATCTGTGGGGATTGAGGATGTGAATGATCTCATTTCTGATCTAGACAATGCACTAAGAACAGGGCCTCTTTAA 1404 0.443 MLSSAISLKPFLQSLIIDRYAQSSTAATRWECLGFNKSENFSTKRVLSTEGFKLCCLVDNREMEVESSSSSFVDDAVVSLSEEDLGEPSISTTVMNFENKFDPFGAISPPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALTAVVHLIGTGEEIVAGDDVYGGSDRLLSQVVPRTGVVVKRINTSDLNEVASSIGPKTKLVWLESPTNPRLQISDIRKIAEMAHSHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIGGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCMRGIKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPDHPGRDLHYSQAKGAGSVLSFLTGSLALSRHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPSAIREARGLTEDLVRISVGIEDVNDLISDLDNALRTGPL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01856 467 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 90 463 IPR000277 GO:0019346|GO:0030170
Vian2g01856 467 Pfam Cys/Met metabolism PLP-dependent enzyme 92 462 IPR000277 GO:0019346|GO:0030170
Vian2g01856 467 Gene3D Aspartate Aminotransferase, domain 1 332 465 IPR015422 GO:0003824
Vian2g01856 467 NCBIfam cystathionine beta-lyase 91 464 IPR006238 GO:0004121|GO:0071266
Vian2g01856 467 Gene3D - 89 331 IPR015421 GO:0003824
Vian2g01856 467 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 273 287 IPR000277 GO:0019346|GO:0030170
Vian2g01856 467 FunFam Cystathionine gamma-synthase homolog 88 330 - -
Vian2g01856 467 SUPERFAMILY PLP-dependent transferases 97 463 IPR015424 -
Vian2g01856 467 FunFam Cystathionine beta-lyase 331 464 - -
Vian2g01856 467 CDD CGS_like 105 463 IPR000277 GO:0019346|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01856 Vian-Chr2 37344014 37350351 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01856 K01760 - gmx:100812354 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01856 2 37344014 37350351 Vian2g01856 2 37344014 37350351 ECH