Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01854 ATGGCAGCTGAGTACGGGTTCGAATTGGCGAGAGTGGGAGGAGAAGGAGAAGAACAAGAAGAAGTGAAAGGGTGTTTGAGCAAGTTCATCGATGATGGCAGCGTTGAAAGTCACAGATACTACTTGTCTCGCAGAACCACTTTGGAAATGCTCAGAGACAGAGGCTACTCCATTCCCTCCAGCGAAATCGACCTTTCTCTCTCTCAATTCCGCCACATGCATGGTCATTCCCCTGACCCTGACCGTCTCCGCCTCTCCCTCACTCACGCCACCAACCCTTCCAAAAGGATTTTAGTCATTTTCTGCGGGCCAGGTTCTGTGAAAGTTACTGCCATTCGGAACATTGCGGGGCAGATTGTTAATAGAGACACTTTGGGTGGTCTTATATTGATAGTGGAGAATCATGTTACTAGCCAGGCCTTGAAAGCCGTTGATCTTTTTCCCTTCAAGGTTGAAATTTTCCAGATCACAGATTTGCTTGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCATCAGGTGCTGACTGATAGGCAGAAGAAAAATCTCCTGAAGAAGTTCAATATAGAAGAAAAGCAGCTTCCCCGCATGCTAAAGAGTGATGCAATTGCACGATATTATGGACTTGAGAGGGGCCAAGTAGTTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACATATCGATGTGTGTGGTGA 705 0.4567 MAAEYGFELARVGGEGEEQEEVKGCLSKFIDDGSVESHRYYLSRRTTLEMLRDRGYSIPSSEIDLSLSQFRHMHGHSPDPDRLRLSLTHATNPSKRILVIFCGPGSVKVTAIRNIAGQIVNRDTLGGLILIVENHVTSQALKAVDLFPFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLKSDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01854 234 Pfam RNA polymerase Rpb5, N-terminal domain 36 118 IPR005571 GO:0003677|GO:0003899|GO:0006351
Vian2g01854 234 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 34 234 IPR014381 GO:0003899
Vian2g01854 234 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 34 162 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vian2g01854 234 SUPERFAMILY RPB5-like RNA polymerase subunit 159 234 IPR035913 -
Vian2g01854 234 Gene3D - 31 158 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vian2g01854 234 Gene3D - 159 234 IPR035913 -
Vian2g01854 234 Pfam RNA polymerase Rpb5, C-terminal domain 161 233 IPR000783 GO:0003677|GO:0003899|GO:0006351
Vian2g01854 234 PIRSF RPB5 29 234 IPR014381 GO:0003899
Vian2g01854 234 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 159 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01854 Vian-Chr2 37319336 37323267 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01854 K03013 - gmx:100306033 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01854 2 37319336 37323267 Vian2g01854 2 37319336 37323267 ECH