Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01840 ATGGCGCAAGTTCTTCTGTATCGTCCTCCTCTGCTTCGCTTCATGGCTTCTCGCTTCTTCACCCGCTCTTCCTTCCATACGCGTTTTTCTTCTCTCCCTTCTTCTACTCTCACCAAAACCAGGACGAGTTTTCATCTGAGAAAATCATGGGTTCCCTGCTCGGTTTCAATTACTGCTACCCCAAGGGCGTTTATGTCTTCTGTTCCTACCACTGAAGCTTTTCAGAAAAGTGAAAGTTCCACAGCTTATGGTTCTGATCAAATTCAGGTGCTGGAAGGCTTGGACCCTGTGAGGAAAAGGCCCGGGATGTACATTGGAAGCACTGGCCCTCGAGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGGTGGGTTTGCTTCCAGGATTGATGTTGTTTTGCTTGCAGATGGTTCTGTGAGCATCACTGACAATGGTCGTGGGATTCCCACTGACTTGCATCCAGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCACGCTGGTGGAAAATTTGGTGGTGCCAACAGTGGATATTCTGTCTCGGGAGGTTTGCACGGTGTTGGTTTGTCTGTTGTTAATGCCTTGTCTGAGTCACTAGAGATAACAGTTTGGCGTGATGGAATGGAATACACACAAAAATATTCTCGTGGAAAACCAGTGACAATTCTAAAATGCCTTGTGCTTCCAGATGAAAGGAAAGATAATCGAGGGACACGTGTTAGATTTTGGCCCGACAAAGAAGTTTTCACCACTGCTATTGAGTTTGATTATAGCACAATAGCTGGACGGATTAGGGAGTTAGCTTTCCTCAACCCAAAGCTTACAATCACACTTCAGAAAGAGGATAATGATCCAAATAAAGCTCAATATAACAAATATTTTTATGCTGGGGGGTTGGTCGAATATGTGAAATGGCTCAATGCAGATAAGAGTAATGACCCATGCAGGATGACCAATGCTAACTCGGGTGTGATAGCATTTCGCCGTCAGTTATTAGTTGTTAAATGGTTACTGACTAGTGACCCTCCGTTTCAGAAAGCTCTTCATGACGTTCTGAGTTTTAGAAAAGAAACTGATGGCATCGCAGTTGATATAGCTTTTCAATGGTGTGAAGATGCATACTCAGATACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGCACTCATATTGAGGCCATGAAGGCTTCTATAACAAGAACGCTGAATGGTCTAGGAAAGAAGTCAAAAGTTATTAAGGATAAGGATATTACTTTAAGTGGCGAGCATGTTAGAGAGGGTCTAACTTGTGTAGTCTCAGTCAAGGTCCCAAACCCTGAGTTTGAAGGACAAACAAAGACAAGGTTAGGAAATCCAGAGGTACGAAAAGTGGTTGACCAATCTATTCATGACTATCTTACTGAGTATTTAGAATTGCATCCAGATGTGCTTGATTCAATACTTTCTAAAGCTCTCAATGCTTTTAAGGCAGCTTTGGCAGCAAAAAGAGCGAGAGAATTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGAAAACTAGCTGATTGTTCATCTTCAAATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATTCTCGGGCTTGGTCTTGGTGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGGTATCATAAGATTATTATTTTGACTGATGCTGACGTGGATGGTGCTCACATCCGAACTTTGCTACTGACATTTTTCTTCAGATATCAGAAAGCATTGTTTGATGAAGGTTGTATTTATGTCGGTGTTCCACCATTGTACAAGGTTGTCCGGGGAAAACAAGTGCACTATTGCTATGATGAGGCTGACCGTAAAAAGCTTCAAAAATCGTTTCCTCCGAATGCATCATACAACATGCAACGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAACGGAGGTTACTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAGTGTTGTTTTTTCCTCTCTTATGGGTACTCAGGTGGATATTCGGAAGGAACTCATACGAAATTCTGCAACCATGATTGATCTTCATCAGCTAGATATTTGA 2280 0.4241 MAQVLLYRPPLLRFMASRFFTRSSFHTRFSSLPSSTLTKTRTSFHLRKSWVPCSVSITATPRAFMSSVPTTEAFQKSESSTAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQGGFASRIDVVLLADGSVSITDNGRGIPTDLHPVTNKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSESLEITVWRDGMEYTQKYSRGKPVTILKCLVLPDERKDNRGTRVRFWPDKEVFTTAIEFDYSTIAGRIRELAFLNPKLTITLQKEDNDPNKAQYNKYFYAGGLVEYVKWLNADKSNDPCRMTNANSGVIAFRRQLLVVKWLLTSDPPFQKALHDVLSFRKETDGIAVDIAFQWCEDAYSDTILGYANSIRTIDGGTHIEAMKASITRTLNGLGKKSKVIKDKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIHDYLTEYLELHPDVLDSILSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVVRGKQVHYCYDEADRKKLQKSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEASVVFSSLMGTQVDIRKELIRNSATMIDLHQLDI 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01840 759 SUPERFAMILY Type II DNA topoisomerase 517 748 IPR013760 GO:0003918|GO:0005524
Vian2g01840 759 Pfam Toprim domain 541 642 IPR006171 -
Vian2g01840 759 Pfam DNA gyrase B subunit, carboxyl terminus 685 745 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 SUPERFAMILY Ribosomal protein S5 domain 2-like 357 513 IPR020568 -
Vian2g01840 759 CDD TOPRIM_TopoIIA_GyrB 540 654 IPR034160 -
Vian2g01840 759 ProSitePatterns DNA topoisomerase II signature. 544 552 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 Pfam DNA gyrase B 308 512 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 83 93 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 264 279 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 592 601 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 279 292 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 496 516 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 482 496 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 726 742 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 363 381 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 434 450 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 PRINTS DNA gyrase subunit B signature 710 722 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 SMART topII5 112 750 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 Gene3D - 513 759 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vian2g01840 759 CDD HATPase_GyrB-like 113 297 - -
Vian2g01840 759 SMART HKATPase_4 108 258 IPR003594 -
Vian2g01840 759 Gene3D - 81 347 IPR036890 -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 192 206 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 147 160 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 542 556 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 390 403 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 112 127 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 627 644 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 647 659 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 609 625 - -
Vian2g01840 759 PRINTS DNA topoisomerase II family signature 689 705 - -
Vian2g01840 759 CDD TopoII_Trans_DNA_gyrase 307 496 - -
Vian2g01840 759 ProSiteProfiles Toprim domain profile. 540 647 IPR006171 -
Vian2g01840 759 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 110 257 IPR003594 -
Vian2g01840 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 295 IPR036890 -
Vian2g01840 759 Gene3D - 348 512 IPR014721 -
Vian2g01840 759 FunFam DNA gyrase subunit B 342 514 - -
Vian2g01840 759 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 355 759 - -
Vian2g01840 759 FunFam DNA gyrase subunit B 80 306 - -
Vian2g01840 759 FunFam DNA gyrase subunit B 513 759 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01840 K02470 - gmx:100807172 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01840 2 37011163 37037475 Vian2g01840 2 37011163 37037475 ECH