Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01837 ATGGATCAGGCAGAGCTTGTGCGAGTTTTTCAAATGTTTGATAGAAACGGGGATGGGCGAATCACGCGGCAGGAGCTGACTGACTCGTTGAAAAACCTGGGAATCTCGATCTCAGAGCCAGACTTGACCCAAATGATCGAGAAAATCGACGTTAATGGAGACGGGTACGTGGACATGGACGAGTTCGGGGAGTTGTACAATGCGATCATGGACGATAAAAACGAGGAGGAGGACATGAGGGAAGCATTCAACGTGTTCGATCAAAATGGAGATGGGTTCATCACGGGAGAGGAATTGGGCGCCGTGTTGTGTTCTTTGGGGCTAAAGCATGGCAAAACCATTGATTATTGCATGAGCATGATCAAGAAAGTGGACGTCGATGGCGATGGAATGGTTAACTTCAAAGAGTTTAAGCAAATGATGAAGGAGGGAGGGTTTGCCGCTTCACCTTCGATACTCTGA 462 0.4784 MDQAELVRVFQMFDRNGDGRITRQELTDSLKNLGISISEPDLTQMIEKIDVNGDGYVDMDEFGELYNAIMDDKNEEEDMREAFNVFDQNGDGFITGEELGAVLCSLGLKHGKTIDYCMSMIKKVDVDGDGMVNFKEFKQMMKEGGFAASPSIL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01837 153 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Vian2g01837 153 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Vian2g01837 153 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Vian2g01837 153 SUPERFAMILY EF-hand 4 141 IPR011992 -
Vian2g01837 153 Gene3D - 2 43 - -
Vian2g01837 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Vian2g01837 153 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Vian2g01837 153 SMART efh_1 78 106 IPR002048 GO:0005509
Vian2g01837 153 SMART efh_1 41 69 IPR002048 GO:0005509
Vian2g01837 153 SMART efh_1 116 144 IPR002048 GO:0005509
Vian2g01837 153 SMART efh_1 5 33 IPR002048 GO:0005509
Vian2g01837 153 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vian2g01837 153 Gene3D - 105 147 - -
Vian2g01837 153 FunFam calmodulin-like protein 3 72 145 - -
Vian2g01837 153 Gene3D - 44 104 - -
Vian2g01837 153 FunFam Calmodulin-like protein 3 1 70 - -
Vian2g01837 153 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Vian2g01837 153 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Vian2g01837 153 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Vian2g01837 153 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Vian2g01837 153 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01837 Vian-Chr2 36977852 36978313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01837 1 153 EF-hand Containing Proteins AT3G07490 75.163 2.60e-70 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01837 K13448 - gmx:100806637 262.307