Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01802 ATGATGGAGGTCTCGGTGGGTGGCAGCAGTGTCTCTGAGCTGAGTCCGGACGAGGAGCGGATCATGATCAAAGACATTGCTCTTGCTGCCCAGGCTAACAGCAAAGAAGGAGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAATATTGGATTGAATATGTGAACCAAGACCAGTCAAACACTTCATATGATGGATCTTCCTTATCTGAACATGATCTAGCCAACTCAAGTGCTTTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATTGATGATACTGTGTCAGAAGACTCTGGTATGGGTATTGAGATTCATGATACTCTTCTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTATGGGATCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATCAGTTCAGGTTTTTCCCAGACAGAATTGGCAGTAGAGGTGTATCCTTTGCGGCTTCAATTGCTTATGTTGCCAAAAAATGACCGTTTTGCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGAAAAGCTTGTGAAATATTTGATCTTCCGCCAGACCAAGTGTGTATATGGGATTACTATTCCCGTCGGAAGCATGCTTTGATGAATGACATGGACAAAACTCTCGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAACAATTCAAACAACACAAGTTTTGCTCAAGAAAACGGTTCTGCATTGAGGGAGGCAAACTTTGCTCTTGTGGAACCTCCAAAGTCGAGCTTATCAATTGCCGGTGGCTTATCTGCTAGCAAAGGTGCATCTAGAGGCTACAATGCAGACCTTTCTTCATCTCTAAACATAAATTCTCCACTCAGAGACATCGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTAACCGGGTTGCTGAATCTTGGCAATACCTGTTACATGAATAGTGCAATACAATGCCTTGTTCATACACCAGAATTTGCTAGATACTTCAGGGAAGACTATCATCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAGCTATGGGCACCTGGACGAACCCCAATTGCTCCTCGGCCCTTTAAAACAAAGCTTGTTCGCTTTGCTCCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGAGCTTTTGGCATTTCTTCTTGATGGTCTTCATGAAGACTTGAATCGAGTAAAACACAAACCATATATAAAGTCTCGAGATGCTGATGGCAGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTTCTCGTAATGATTCCATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAATTTGCAATAAAGTGTCTGTCACATTTGATCCTTTTATGTACCTTTCCCTGCCACTCCAATCCTCCACTGCCAGTAGAACCATGACAGTGACAGTCTTTGCTTGTGATGGGGCTGCCCTTCCATCTCCTTGTACAGTAACTGTCCCTAAGCAGGGACGAATCAAGGATCTCATCCAGGCACTTAGTAATGCCTGCTCATTGAAGCACAACGAGAGGCTATTGCTTGTGGAGGTACGAAACCATTTGATCCATAGATATTTGGAAGATCCTGTTCATTTGTCTACTATTAAAGATGATGAGCGTCTTGCTGCTTACAAGATTCCAAAGACAGACAAGAACACAAAGTATCTCCAGTTGATACATCGCCGAAGAGAGCAGAGCAGTGACTCACATGTCATATCTGGATGGAAACCGTATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTAATGGTTAATCGTATTCTTTCCCCTCTGCTAAGGAGAGGTGGTAATGTAGAACAAGCTACTAATTCTGAAGTGAGCATCCCAAAAACAGAACCTGATGAATGCAGTAATACTCATGATGCTGCATGTGCTGGCAACGTGGTGTCAAACTCATTAAATAAGGATTTTACCAATTCAAAGGCACCATCAATGCCAACACTACCTCTTCTCTTGGTTGGTGATAACAATGCATGCATTGATCTTTCAATGGGCGAGGAGAAGGTGGTTAAACTGCCTCAATCATCTCCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCAATTGAGAGTTTGCCTGAAGTTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGGGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCCAAATGCAAAGAGAGACGACAAGCTAGCAAGAAGCTTGATTTGTGGAGGCTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTTTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTCAACTTTCCCATTCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGCCGGCAACTGTACGAACTGTATGCCCTCACAAATCATTATGGTAGCATGGGTAGCGGGCATTACACTGCACATATCAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATAACACTGATAAGTGAAGATGAGGTTAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACTGAGGAAGCAGCCATTAGCAATGGAGCCTAG 2805 0.4242 MMEVSVGGSSVSELSPDEERIMIKDIALAAQANSKEGDTFFLITQRWWQYWIEYVNQDQSNTSYDGSSLSEHDLANSSALKRPAGIDNSDLIDDTVSEDSGMGIEIHDTLLEGRDYVLLPQEVWDQLFRWYGGGPTLARKVISSGFSQTELAVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHRKACEIFDLPPDQVCIWDYYSRRKHALMNDMDKTLDDANLQMDQDILVEVINNSNNTSFAQENGSALREANFALVEPPKSSLSIAGGLSASKGASRGYNADLSSSLNINSPLRDIENPYGTSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKTKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHISRNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQSSTASRTMTVTVFACDGAALPSPCTVTVPKQGRIKDLIQALSNACSLKHNERLLLVEVRNHLIHRYLEDPVHLSTIKDDERLAAYKIPKTDKNTKYLQLIHRRREQSSDSHVISGWKPYGTPIVSLISCDDTVTRGDIQVMVNRILSPLLRRGGNVEQATNSEVSIPKTEPDECSNTHDAACAGNVVSNSLNKDFTNSKAPSMPTLPLLLVGDNNACIDLSMGEEKVVKLPQSSPKVLVYIDWSQKLLEKYDTHPIESLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHITLISEDEVNTAAAYVLFYRRVKTEEAAISNGA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01802 934 Gene3D - 5 155 IPR035927 -
Vian2g01802 934 Gene3D Cysteine proteinases 309 550 - -
Vian2g01802 934 Pfam Ubiquitin carboxyl-terminal hydrolase 319 920 IPR001394 GO:0004843|GO:0016579
Vian2g01802 934 Pfam Ubiquitin-specific protease C-terminal 492 626 IPR029346 -
Vian2g01802 934 CDD Peptidase_C19R 768 921 - -
Vian2g01802 934 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 865 882 IPR018200 GO:0004843|GO:0006511
Vian2g01802 934 SUPERFAMILY Cysteine proteinases 317 923 IPR038765 -
Vian2g01802 934 Gene3D - 156 243 - -
Vian2g01802 934 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 319 923 IPR028889 -
Vian2g01802 934 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 248 922 - -
Vian2g01802 934 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 320 335 IPR018200 GO:0004843|GO:0006511
Vian2g01802 934 SMART dusp 33 145 IPR006615 GO:0004843
Vian2g01802 934 Pfam DUSP domain 37 142 IPR006615 GO:0004843
Vian2g01802 934 SUPERFAMILY DUSP-like 15 142 IPR035927 -
Vian2g01802 934 Gene3D Cysteine proteinases 734 931 - -
Vian2g01802 934 SUPERFAMILY Ubiquitin-like 167 238 IPR029071 -
Vian2g01802 934 ProSiteProfiles DUSP domain profile. 14 142 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01802 Vian-Chr2 36372595 36386614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01802 776 929 Miscellaneous Gene Families AT4G31670 33.121 6.84e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01802 - - gmx:100794067 1702.57