Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01791 ATGGCCAAAGGCGTAATCTCAGACGAAGAAGACGACGTCGAGCTCGACGAAGAAGAGAGGGAACCCATTGACGGGGACGAATTGGAAGAGGGGCGGGATGTGGATAACGAAGATGAAGACGAAGAAGAGGAAGGGCAAGATGAGTATGAAAATGATGGATTTATTGTGGATGACATTGAGGACGAAGAGGAGCAAGATGAAGAAGAGAGAGCAGACAGTGATGATGAGCGACAGAGGAAGAAAAAGAGGAAGAAAAAGGAAGAGTATGTGCTTGATGAAGATGATTATGAGTTGCTGGAGGACAACAATATAAATATTCATCGTCGGAAGGAAAGCAAAAAGTTTAAGCGACTGAAAAAAGGCCGGAGGGATACGGAAGAGGAGCCTTCTGGGCTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAAGGAGAGGAAGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAACGGAGCTCCTATGAGGCAGAGGAAGCTGAAGAAGAAGAAAACTAGGCAGGCTCCAGGAGTTTCTTCCTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTTGAAATGAGTGAATACAGAGAGACCAGACTTGAAGATGAATTTGAGCCTATTGTTCTGTCTGAGAAATATATGACAGAGCAGGATGACCAAATTAGGGAGCTTGATATTCCAGAGAGAATGCAGATCCCTTTTATTGCTATGTATCGGAAGGAGGAATGCTTAAGCCTATTAAAAGACCTGGAGCAACCTGAAGCTGTTGACGAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTTCTCTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGAGGAAGAGTGCCCTCAAGTTATATTATAATAAACGATTTGAAGAGGAGTCGCGTCGTGTGTATGATGAAACGAGACTAAACTTGAATAGTCAATTGTTTGAGTCAGTCATGAGATCTCTGAAGGAAGCAGAGTCCGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCGAGCAGGTTCGGGTGTAGTCCTGAGCAACTTGGATTTTGTCTAACTGATGTGAACCTACAAGAGTTGGAAGATCCAAAGGAAACACCTGAGGAGATGGCTTCTAACTTCACGTGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCCACTTTCTTGACCATGCGGTTGTGTCAACATGTCCTACTGCTGATGGGAATACAGCAATAGATTCTTTCCATCAATTTTCTGGGGTGAAGTGGCTGCGGGAGAAGCCATTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATTCAGAAGGCAGAAGAGGAGAAACTCATTCAAGTTACTATTAAGTTGCCTGAGGAGTATCTTAATAAGTTGATAGACCAATTCAATGAATATTATATCAGTGACAGCGTTAGCAGATCTGCTCAACTGTGGAACGAACAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCATTATGGAATAAGGTTTCTGTTGGACCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGAGGAGGCCGCTCCAAGGGTTATGGCATGCTGTTGGGGCCCGGGAAAGCCACAAACAACTTTTGTAATGTTAGATTCATCGGGAGAAGTGTTAGATGTGCTTTACACTGGGTCCCTTACTTTTAGGTCACAGAATGTTAGTGACCAACAACGGAAGAAGAATGACCAGGAGCGAGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTTATTTTTAAGATGGTTGAGGAAAACCCTAGAGATGTCGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCACTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAGCAAGGTATAGTGAGGCGGGCTGTTGCACTTGGTCGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGCGAACCTAGAAAGGAAATCTTGTCATGGAAATTGAGCCCTTTAGAGAGTTTTCTCAACCAAGATGATAAATTTGCTATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCACCATTACAGTTTATTTCTGGGCTTGGTCCAAGGAAGGCTGCATCCTTACAGAGATCTTTGGTAAGGGCTGGTGCCATTTTTACACGGAAGGACTTTGTCACAGAACACAAACTTGGTAAAAAGGTGTTTGTCAATGCAGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTGGCAGCTAGCAGCAGCCAATTTATTGATTTACTGGATGATACAAGAATTCATCCTGAATCTTATATACTTGCACAAGAGTTGGCCAAAGATGTATATGAAGAAGATGGTACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAGCACGTGAGAGATCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGAAAAAATCGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTAATTCAAGGTTTTCAGGATTGGCGCAATCAATATGAAGAACCAAGTCAGGATGAAGAATTCTATATGATTTCAGGTGAGACTGAAGAGACGCTTGCTGAAGGCAAAATTGTCCAAGTCACAGTTCGAAGAGTACAGGCTCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATTCTCATGAAGGAAGACTACACAGATGACTGGAGAGATGTAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATTCAAAAGAATAGGTATCAAGTCTTCCTTGTTTGTAAGGACAGTGAAATGAGAAGTAACCGCTTACAGCATAACCGTGATATTGACCCCTATTACCATGAAGATCGGAGCTGCTTTCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAACTTGCTAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTGTGTATGCACATCCTGACTTGTCTTGGTAGGTGGAAGGTTTTAGTCCTTGGTGACAAGTTTTTTTTCCTGAATGGCTCCTGCATTCAATTGGTTGAGTTGGTGTTGGTTTGTATGGTAAAATTGGTTGGGGATGATAACTTTGGACTAATTTCTGTAATTGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGATGGAGTATATGCCCATAAGGATATAATCGAAGGTGGCAAGGAACACAAGGACATTACAAGCTTACTGCGAATTGGGAAGACACTAAAAATTGGAGACGACACTTTTGAGGACTTAGATGAGGTTATGGACCGATATGTAGATCCATTGGTGGCTTACTTAAAGACAATGCTAAACTATCGCAAATTTAGAAAGGGTACAAAATCAGAAGTTGATGAACTTTTGAGGATTGAGAAAGCTGAGTATCCTACGCGCATTGTCTATAGTTTTGGCATCTCCCACGAGCATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCACGAGTACATTGGGCTTTACCCAAAAGGATTTAGGTTCAGGAAAAAGATGTTTGAGGACATCGATCGGCTTGTGGCATACTTTCAGAGGCATATTGATGACCCCCAACACGATTCAGCCCCCTCCATTAGATCGGTTGCTGCTATGGTACCAATGCGTAGCCCTGCAACTGGTGGCTCGTCTGGGCCATCTGTGGGCAGTGGCTGGGGTGGTGGTTCAAACAATGAGGGTGGTAGGAGAGGTCACTCTTATGATAGGGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGTGGTGAGTATAGAAACAATGGGAATCAGGACGAACATCCAAGTGGGGTGCCCCGTCCATATGGTGGTGGTCGAGGACGTGGTCGCGGTCGCGGTTCTTATAACAACAGAGGACACAATTCCAACAATGAAAGGCAGGACTCTAGTTATGGGGGCAGCAGGTGGGGTTCTAATAACCCAAAGGATTCAGATGATGGTTTAAACAGTTTTCCAGGGGCCAAAGTTCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGTAAGTGGCGGTTGGGGAGGTGGAAGCGGTAGCACTAATAACAATGACAATGGTGTCTGGGGACAAGAGATTGGTGGTGGTGGTGGTCCAAGTGATGGTGATCAAGGAAGCTCTGGCTGGGGAAGCGCCCCCAAGAAAGCAGCAGCTGGGAACGGATGGGGGTCTGGAAATTCTGGTTGGTGA 4899 0.4342 MAKGVISDEEDDVELDEEEREPIDGDELEEGRDVDNEDEDEEEEGQDEYENDGFIVDDIEDEEEQDEEERADSDDERQRKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEYRETRLEDEFEPIVLSEKYMTEQDDQIRELDIPERMQIPFIAMYRKEECLSLLKDLEQPEAVDENDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALKLYYNKRFEEESRRVYDETRLNLNSQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGFCLTDVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRTHFLDHAVVSTCPTADGNTAIDSFHQFSGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDEEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTFRSQNVSDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCEPRKEILSWKLSPLESFLNQDDKFAMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKNRQNKIQTFYDIKRELIQGFQDWRNQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQHNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMELCMHILTCLGRWKVLVLGDKFFFLNGSCIQLVELVLVCMVKLVGDDNFGLISVIEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVAYLKTMLNYRKFRKGTKSEVDELLRIEKAEYPTRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPATGGSSGPSVGSGWGGGSNNEGGRRGHSYDRDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGSYNNRGHNSNNERQDSSYGGSRWGSNNPKDSDDGLNSFPGAKVQNSPGREAFPGGWGGVSGGWGGGSGSTNNNDNGVWGQEIGGGGGPSDGDQGSSGWGSAPKKAAAGNGWGSGNSGW 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01791 1632 SMART S1_6 1053 1126 IPR022967 -
Vian2g01791 1632 CDD SH2_Nterm_SPT6_like 1237 1320 IPR035019 -
Vian2g01791 1632 Gene3D - 667 828 IPR037027 GO:0006139
Vian2g01791 1632 SMART rnase_8s 667 785 IPR006641 GO:0006139
Vian2g01791 1632 FunFam Transcription elongation factor spt6 1048 1136 - -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1 226 - -
Vian2g01791 1632 CDD SH2_Cterm_SPT6_like 1331 1417 IPR035018 -
Vian2g01791 1632 FunFam Transcription elongation factor spt6 1330 1423 - -
Vian2g01791 1632 Pfam Helix-hairpin-helix motif 826 927 IPR032706 -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 72 92 - -
Vian2g01791 1632 Gene3D - 933 1028 IPR042066 -
Vian2g01791 1632 SUPERFAMILY Nucleic acid-binding proteins 1050 1130 IPR012340 -
Vian2g01791 1632 Gene3D SH2 domain 1236 1329 IPR036860 -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 9 71 - -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1479 1495 - -
Vian2g01791 1632 Coils Coil 56 79 - -
Vian2g01791 1632 Gene3D - 268 407 IPR023319 -
Vian2g01791 1632 FunFam Transcription elongation factor spt6 657 833 - -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1464 1478 - -
Vian2g01791 1632 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 1242 1540 IPR017072 GO:0032968
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1516 1557 - -
Vian2g01791 1632 FunFam Transcription elongation factor spt6 415 674 - -
Vian2g01791 1632 Pfam SH2 domain 1237 1416 IPR035420 -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 139 161 - -
Vian2g01791 1632 SUPERFAMILY Tex N-terminal region-like 286 646 - -
Vian2g01791 1632 Gene3D - 1031 1131 IPR012340 -
Vian2g01791 1632 SUPERFAMILY Ribonuclease H-like 667 823 IPR012337 -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1442 1456 - -
Vian2g01791 1632 PIRSF Spt6 1236 1494 IPR017072 GO:0032968
Vian2g01791 1632 PIRSF Spt6 2 290 IPR017072 GO:0032968
Vian2g01791 1632 PIRSF Spt6 289 1194 IPR017072 GO:0032968
Vian2g01791 1632 Pfam Holliday-junction resolvase-like of SPT6 666 822 IPR028231 -
Vian2g01791 1632 SUPERFAMILY RuvA domain 2-like 838 928 IPR010994 -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1578 1592 - -
Vian2g01791 1632 SUPERFAMILY RuvA domain 2-like 941 1030 IPR010994 -
Vian2g01791 1632 Gene3D - 424 666 IPR023323 -
Vian2g01791 1632 MobiDBLite consensus disorder prediction 1437 1632 - -
Vian2g01791 1632 Pfam HHH domain 942 1029 IPR041692 -
Vian2g01791 1632 FunFam Transcription elongation factor spt6 832 930 - -
Vian2g01791 1632 ProSiteProfiles S1 domain profile. 1055 1126 IPR003029 GO:0003676
Vian2g01791 1632 MobiDBLite consensus disorder prediction 163 199 - -
Vian2g01791 1632 Gene3D - 837 929 - -
Vian2g01791 1632 Gene3D SH2 domain 1330 1426 IPR036860 -
Vian2g01791 1632 FunFam Transcription elongation factor Spt6 934 1028 - -
Vian2g01791 1632 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01791 Vian-Chr2 36214628 36223575 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01791 K11292 - gmx:100808591 2274.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01791 2 36214628 36223575 Vian2g01791 2 36214628 36223575 ECH