Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian2g01789 | ATGACGGCTCAAACTCAAGAGGAGCTTCTAGCCCAACACCTCGAACAGCAAAAGATCCATCATGATGAGCCTGTAGTTGAGGATGATGATGACGAGGAAGATGAAGACGACGAAGACGAAGAGGATGATGATCATGGTGAAGGACTAGAAGGTGATGCATCTGGTAGGTCCAAGCAAACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTCGCTGGTGTCAGCCGAGTGACAGTAAAGAAAAGCAAGAATATCCTGTTTGTTATTTCAAAGCCAGACGTTTTCAAGAGTCCAACTTCTGATACATACATTATATTTGGGGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAGACTCAGGCAGCAGAGCAATTCAAGGCTCCTAATGTAAGCAATGTTGGATTGAAGCCTGAATCCTCTGCTATAGCTCAAGATGATGAGGAAGTGGATGAGGCTGGTGTAGATCCCAAGGATATAGAGCTGGTGATGACTCAAGCTGGTGTGTCAAGACCTAAAGCTGTTAAAGCACTCAAGGCAGCCGGTGGTGACATTGTTGCTGCCATTATGGAGCTAACTAATTAA | 606 | 0.4488 | MTAQTQEELLAQHLEQQKIHHDEPVVEDDDDEEDEDDEDEEDDDHGEGLEGDASGRSKQTRSEKKSRKAMLKLGMKPVAGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNVSNVGLKPESSAIAQDDEEVDEAGVDPKDIELVMTQAGVSRPKAVKALKAAGGDIVAAIMELTN | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian2g01789 | 201 | Pfam | HYPK UBA domain | 162 | 200 | IPR044034 | - | |
| Vian2g01789 | 201 | MobiDBLite | consensus disorder prediction | 49 | 70 | - | - | |
| Vian2g01789 | 201 | SMART | NAC_2 | 63 | 119 | IPR002715 | - | |
| Vian2g01789 | 201 | Gene3D | - | 162 | 199 | - | - | |
| Vian2g01789 | 201 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
| Vian2g01789 | 201 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
| Vian2g01789 | 201 | FunFam | Putative nascent polypeptide-associated complex subunit alpha | 162 | 199 | - | - | |
| Vian2g01789 | 201 | CDD | UBA_NACA_NACP1 | 155 | 200 | - | - | |
| Vian2g01789 | 201 | ProSiteProfiles | NAC A/B domain profile. | 60 | 125 | IPR002715 | - | |
| Vian2g01789 | 201 | Gene3D | - | 69 | 122 | IPR038187 | - | |
| Vian2g01789 | 201 | Pfam | NAC domain | 63 | 118 | IPR002715 | - | |
| Vian2g01789 | 201 | PANTHER | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED | 21 | 200 | IPR016641 | GO:0005854 | |
| Vian2g01789 | 201 | CDD | NAC_NACA | 74 | 121 | - | - | |
| Vian2g01789 | 201 | FunFam | Nascent polypeptide-associated complex (NAC), alpha subunit | 70 | 122 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian2g01789 | Vian-Chr2 | 36206155 | 36208551 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian2g01789 | K03626 | - | gmx:100791967 | 332.413 |