LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g01729	ATGTCTCTGCCACTTTCTTCCCCAAAATGGTTGACCAATTGTGTTCAATCACTCATCTTCATTCTGTGTTGTGTTGTTTTCCTCATATTTGATCTTCTTGATTCTGTTTTCTGCGTTATCTATGGATATATTGATAAACTCATTGAAGGAGAGGTTTCGCCTTGTTGCTGCTCTAATTGGGAGAGGCAAAAGAGGCGGATGAATGTGACAGATGATGATATATCAGATAGCTTGTATGAGAGGAGGAACATTTTCAGAGAAATGGGGTTCCTTCGATATGAGAGAAAACGAGAAGATTCCACCACAAATTTTGTTAAAGGTAGTGCCCGGTCAGTGAATCGTTGGTCTGATTGTGGCTGTGATTCTTGCCTTTCATGGGTGAATGATGGAAGTGACTATAAGCTTCATTTTGTTGTGAAGGAGCCCTTGTTGGTCCCTGGTGAGAACTGCAAGGGAAAACCTTCTGAGAATGTGATCTTCTTACATGGATTTCTCTGTTCTTCCTCATTTTGGACAGAGACAGTGTTTCCATATTTTTCTGAAAAGACGAATCACGAGTACAGATTGATTGGCATTGACCTGCTGGGATTTGGCAAGAGTCCAAAGCCTAGAGATTGCTCATACACTTTGCAGGATCATGTGGAAATGATTGAGAAATCTGTGGTTTTACCATTGGAGATGACTACCTTTCATTTGGTTGCACACTCCATGGGATGCATAATTGCATTGGCCTTGGCTGCTAAGTACCCAAAGAATGTAAAATCAATCACCCTTGTTGCTCCTCCATACACTTCTTCTGAGGGTGATGCTTGTTTAAATGCACTATCAATGCTTGCTGGAAAGAAATTGTGGTCTCCACTGTCTTTTGGTTCTTCATTTATGTCCTGGGATCTTCATTTCTTGACCACAGACATGACCAGGCACACACATCATTCAGCTTGGAGTTCCATGCATAATGTGCTATGTGGAGGAGCAAAATTTGTGGACAGTTACCTCATCATTTTGACCAGAGTTGGAGTGAGAATAAATGTGATTCAAGGTGAAAAGGATCAAGTTGTCCCAATGGAGTGTTGTAGTAAGTTCGAGTTGAAGGCTCCTGAAGCTGAAATCAACATCATTCCAAATGCAAACCATGGGACTGTACTATTTGGCAGAGAGAAAGAATTTGCACTTAGTCTAGAGCATATATGGGAATCTTGCTGTTGA	1206	0.4121	MSLPLSSPKWLTNCVQSLIFILCCVVFLIFDLLDSVFCVIYGYIDKLIEGEVSPCCCSNWERQKRRMNVTDDDISDSLYERRNIFREMGFLRYERKREDSTTNFVKGSARSVNRWSDCGCDSCLSWVNDGSDYKLHFVVKEPLLVPGENCKGKPSENVIFLHGFLCSSSFWTETVFPYFSEKTNHEYRLIGIDLLGFGKSPKPRDCSYTLQDHVEMIEKSVVLPLEMTTFHLVAHSMGCIIALALAAKYPKNVKSITLVAPPYTSSEGDACLNALSMLAGKKLWSPLSFGSSFMSWDLHFLTTDMTRHTHHSAWSSMHNVLCGGAKFVDSYLIILTRVGVRINVIQGEKDQVVPMECCSKFELKAPEAEINIIPNANHGTVLFGREKEFALSLEHIWESCC	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g01729	401	Gene3D	alpha/beta hydrolase	126	399	IPR029058	-
	Vian2g01729	401	PRINTS	Alpha/beta hydrolase fold signature	246	259	IPR000073	-
	Vian2g01729	401	PRINTS	Alpha/beta hydrolase fold signature	342	356	IPR000073	-
	Vian2g01729	401	PRINTS	Alpha/beta hydrolase fold signature	232	245	IPR000073	-
	Vian2g01729	401	PRINTS	Alpha/beta hydrolase fold signature	186	201	IPR000073	-
	Vian2g01729	401	PANTHER	HYDROLASE	128	390	-	-
	Vian2g01729	401	Pfam	alpha/beta hydrolase fold	158	261	IPR000073	-
	Vian2g01729	401	SUPERFAMILY	alpha/beta-Hydrolases	131	386	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g01729	Vian-Chr2	35343468	35345396	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g01729	22	400	Acyl Lipid Metabolism Gene Families	AT5G17780	45.433	2.47e-121	356

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g01729	-		-	gmx:100775258	672.159

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian2g01729	2	35343468	35345396	Vian2g01729	2	35343468	35345396	ECH