Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01728 ATGAGTGGCGTGGCCCCAAGGTTCCTCTTCTTCCTCTCCACTCCCCTCCCTCTGCTCCGCCGCCACCACCACTTCAACCTCTTTCTCCTCTCTTCCCATTCCCTCCGCCTCTCTGCTTCACCTTCTTCCTTCTCTTTCTCATCTTCACCTTTGCCACTCAAACTCAGAGCCTCCCAGTTTTCCTATGCCTACTCATCTCCCTGCCCTGAGTACTCCTCTTTCCTCTCTCACATATCCTCCGCCGGCTACCTCTCCTCCCTCCCCGATGAAGCCTTCACCGCCGCCGCCCAACATCTCTCCTACTCCTTTCTCCGCGACGCCACCGCTTGCTTGGCCTTCGCACGCGACCGCCCTAACCTTCTCAGGTTGCTTTCTACGAGACATATTGCGGCCGTGGTTGAGCACGGCTCCCCCTTTCTCTTCCGCGATGCAGATGATTCCGTCAGGAAGATGAAGTCCTTTCTGTCCAACGGTGACGCCAATGTGTTGGACACTGATAGAGCAAATACGGTTGACCTAATGAAGTTTTTGCTGAGCTATGCGAGTGATCCATATGTCCCTTCAGAAGGGAACAGTCTCAATGAAAGAAATCTTCTTGAATCATCTGTCAGAAATCTCTTTGATGAACTTTTCAAACTGAGTTATAGTGCACCTGGATCAAATTCTTTTGATTCAGTGCAAAGTCAAATGGCTGGAAGATTTGGATATACAAAGCCTCCTGCACAAAAGATTGAAATGAAGAGGGGTGATTGGATTTGCTCAAGGTGTAATTTCATGAATTTTGCCCGAAACATCAAATGTCTTGAGTGTGATGAAGCAAGGCCAAAAAGGCAACTCGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTTTAACTATGGGAGGAACATGAGTTGCTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTTTGGGTGCCATCAATACCATGTCAAATAAGGAGTACGAAAATGGAAACAATCCTAATACTTCAGATATTGATCCTAGGTTAGCTGCTAATGAAGAAAAGGCACAGCGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCAGTGCTGATATTAACAGTGTGGTTGCAGATGAAGATTTTCCTGAAATAATGCCACTGAGGAAAGGAGTTAATAGATTTGTTGTGAGCACAAGAAAGACTCCACTGGAGAGGAGGTTGGCTAACGCTCAATATAAGAGAAACTTGTCTAATTATGACATTTCTGGGACTGAGGATTTTAATGTTGGGGAGCCAATCAAGTCCCATGACAGTCTGGATGACATGCTAGGTCATTCAGCTGGCCTTCCTCAATATGGCAATAACAACATTGTTTCTGAACAAAATGCTGGCGGAGACAGGCAACCTTCATTTGCTAGCTATAGCAATACTTCACATTATAAAAATGTTCAAGGGAACTACACTAGTACTGTTTCTCCCAGTCCATTGTCTGCAGATTCACTTGGCCCGAAGTCTGAGAACTTGCTATCAGACGAGAGCAAAAATGTGGTGTTAGACACTGATATCGGATATGCTAGTTTGGGAGACAGTTCACAAGATTCTAAGAATTCTACAAATATCACAGAGGATAAGAAGAAAGAACAAGCTGAAAAATCTGAGAAATGGTTAAGAAAGATTGCTGAGCTGAATGATTTTCCAGATGTGACAAGTGCAATATCCGATGAGGATTTCCCTGAAATAATGCCCATGCGTAATGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGATCGTTCTTTAACAACACCAGCATATAAGAGACAAGTGGCAATGGAACAAGCTAGCAAAACCAACTTTGTTCCGTTTGTCCCCTTCCCCCCAGATTACTTTGCTAAAAAGGACAAGCCGCAGGCAGATGGAACAGATTCAATGGATAGGTCCAATGATGGTACATCTTCCATTTCTGAGGTGGCAGAGAAGGCTTCAGAGATATCGGATGATACTAGAGCTCAACCAGAACAGAGTCCAAAGTCTTCTGAACAGAGCTCAAATAACAATGATATTGGCTCTATGTCTTGGTCAGGAACCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCACGTTCCAAATTTGACTGGGAGTTCATCCCCAGTTCCAACATCTGACAACCAGAGTGGTAAAGCAGAGTGGACAGGGAAGAGTTTGGAGGGGTCTGCCGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCAGGCGTGTTGCACAAATTAAGGATATATCTGAACTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAGGCAAGAGGAAAACTCCATTGGAAAGGAGATTGACATCTCAGCAATACAGAAGAAATCTACCAACTGTGAGCTCAGATCCAAGTAAAAACGAAAATGAAGGGAGCTGA 2460 0.4459 MSGVAPRFLFFLSTPLPLLRRHHHFNLFLLSSHSLRLSASPSSFSFSSSPLPLKLRASQFSYAYSSPCPEYSSFLSHISSAGYLSSLPDEAFTAAAQHLSYSFLRDATACLAFARDRPNLLRLLSTRHIAAVVEHGSPFLFRDADDSVRKMKSFLSNGDANVLDTDRANTVDLMKFLLSYASDPYVPSEGNSLNERNLLESSVRNLFDELFKLSYSAPGSNSFDSVQSQMAGRFGYTKPPAQKIEMKRGDWICSRCNFMNFARNIKCLECDEARPKRQLAGGEWECPQCDFFNYGRNMSCLRCDCKRPGQISLGAINTMSNKEYENGNNPNTSDIDPRLAANEEKAQRWFSKVSQLDSSADINSVVADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLSNYDISGTEDFNVGEPIKSHDSLDDMLGHSAGLPQYGNNNIVSEQNAGGDRQPSFASYSNTSHYKNVQGNYTSTVSPSPLSADSLGPKSENLLSDESKNVVLDTDIGYASLGDSSQDSKNSTNITEDKKKEQAEKSEKWLRKIAELNDFPDVTSAISDEDFPEIMPMRNGENRFVVSKKKDRSLTTPAYKRQVAMEQASKTNFVPFVPFPPDYFAKKDKPQADGTDSMDRSNDGTSSISEVAEKASEISDDTRAQPEQSPKSSEQSSNNNDIGSMSWSGTSGNSRQSFNQDHVPNLTGSSSPVPTSDNQSGKAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVGKRKTPLERRLTSQQYRRNLPTVSSDPSKNENEGS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01728 819 MobiDBLite consensus disorder prediction 658 722 - -
Vian2g01728 819 Gene3D - 278 310 - -
Vian2g01728 819 Gene3D - 240 277 - -
Vian2g01728 819 MobiDBLite consensus disorder prediction 796 819 - -
Vian2g01728 819 MobiDBLite consensus disorder prediction 610 741 - -
Vian2g01728 819 ProSitePatterns Zinc finger RanBP2-type signature. 251 270 IPR001876 -
Vian2g01728 819 SMART zf_4 282 306 IPR001876 -
Vian2g01728 819 SMART zf_4 249 273 IPR001876 -
Vian2g01728 819 SUPERFAMILY Ran binding protein zinc finger-like 243 276 IPR036443 -
Vian2g01728 819 ProSitePatterns Zinc finger RanBP2-type signature. 284 303 IPR001876 -
Vian2g01728 819 ProSiteProfiles Zinc finger RanBP2 type profile. 247 276 IPR001876 -
Vian2g01728 819 MobiDBLite consensus disorder prediction 428 498 - -
Vian2g01728 819 MobiDBLite consensus disorder prediction 786 819 - -
Vian2g01728 819 ProSiteProfiles Zinc finger RanBP2 type profile. 280 309 IPR001876 -
Vian2g01728 819 MobiDBLite consensus disorder prediction 633 649 - -
Vian2g01728 819 Pfam Zn-finger in Ran binding protein and others 248 274 IPR001876 -
Vian2g01728 819 Pfam Zn-finger in Ran binding protein and others 282 308 IPR001876 -
Vian2g01728 819 PANTHER ZINC FINGER PROTEIN 43 407 - -
Vian2g01728 819 MobiDBLite consensus disorder prediction 515 540 - -
Vian2g01728 819 MobiDBLite consensus disorder prediction 439 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01728 Vian-Chr2 35323636 35327051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01728 109 313 EF-hand Containing Proteins AT1G55040 36.681 5.90e-38 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01728 - - gmx:100792849 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01728 2 35323636 35327051 Vian2g01728 2 35323636 35327051 ECH