Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01691 ATGGACTTCGATCAACACCTAACGGAGCTTTCCGCTTCTTCGCCATGCATTCCCTCTGGCGAGGACTTCCATTTCTACTACAAATTCACGGAGTTCCGACGCCCGATAGAAGAAATCGCGCGGAGGACACAGTCGATGCTCAACAGAATTGGTTCCGCAGAGAATATTTGGGGCAGAGGCTCGGCATTTCCCGCTGACGTGGACGACGCGTACGAGTGGCTTGTGAATGCGAACGACGATGTTTTCGAGCTGGTTGATGAGTTGGTGGACGAGTTGCGGAGGATTATGAAGGAGGAGGGAGTGGAATTTGAAAACGAGTTGGAGGAGAAGACAAAAGTGCCGTTTCATATACCGACGATCAAGAAGCCTCAGTATGCGTATAATATTGTTGTTGATAATGCAAACCAGCCTTTTGAGCATGTTTTGTTGGAGAAAAGTGAAGATGGTCAGCGGTTTATTCATCCACTGGAGAAATTCTCTGTTTTGGATTTTGTTGATAAAGAAAATATTGAGGATATTTTGCCAATAAAGTCTCTGTCAATAGAATGCACCCCTTTCAAGCTTGTAGAGGAAGTCAAAGGATTGAAGGAGTTGGCTGCTACGCTGTCTACAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCATTCCAAGGTTTGACTTGCTTAATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGACACTTTGAAGGTTCGTAATCATGTTGGACCATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCTGATCGTGATATTTTGTGGCTGCAACGGGATTTTGGCATTTATGTCTGTAATATGTTTGATACTGGCCAGGCTTCTAGAGTGTTAAAAATGGAGAGATACAGTTTGCAACATCTTTTGCAACACTTCTGTGGGATTACTGCAAACAAGGAATACCAGAATGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTGAGATATGGCAGAGAGGATACACACTATCTGCTCTATATATATGATTTAATGAGGATCAAATTGTTTACATTGTCTAAGGAGTCTGAAGGTTGTGATAATCCTCTACTGGAGGTTTATAAGCGCAGTTATGATATCTGCAAGCAGTTATATGAGAAGGACCTGCTGACAGAAAACTCGTTCCTTCATTTATATGGGTTGCGAAGGGCTGGTTTTAATGCTCAGCAGCTTGCTGTTGTTTCAGGGCTCTGGGAATGGCGTGATGATCTTGCACGTGCAGATGATGAGGGGCCTGGTTATGTATTGCCAAATAAAATTATTCTTGAAATTGCTAAGCAGATGCCTGTCATTATAAGCAATTTACGGAGAATAGTAGGAAGGTCAAAGCTCCCATATGTTGAGCGCAGCCTTGATGTCATTGTTAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGCTGCACTACGTTTGAAGGAAGAACATGCGGCAAGTTTGTCAAATGTAGTACCCATTAAGGATGGAACTGAAGTACCTCAGACGCAAAACTTAAAGATTGGAGGCGCAGCAACAGAAAGCATTGGAGTTGAAAATGACACCTGTATTGATATCTCGGAGAATTGTTTTTCTCCTGACATGGAGGAGGAATGTTTTCAGCATGAAGATAAAGATGGACAAGGAAAAGTTATTGCACTCTCTACAGCGAAGGGCAATGGAGAGGTGCTAAAACTGCCTACTGGAGCTATTGATGCTCCACTTCTGGGCTATCCAATGTCAGAATGGAAGCCACGTCCCAACAAAAAGGTCAAGGAGGAGATCAAGCTAGAACAGATTGAACCATCGGACAATCTTCCATCCCTTTTTGTTTTGGACAATAGTGAGAAGCTAAAACTAGCATCTGAAAAATCAGACCCACAGAAGAAACCCGTTTCAGGTTCAGTTTCTACCTGCTCCCCTGTTGGGGTTGTAACGGTAATGTCTGATTCAGACTCGGAGGATACGCCGCAGCTAAAGAACTCCAACAACTACCCAGGAAAAAATTCTCTTGTGCCCAGGAAAAGAAGATAA 2073 0.4327 MDFDQHLTELSASSPCIPSGEDFHFYYKFTEFRRPIEEIARRTQSMLNRIGSAENIWGRGSAFPADVDDAYEWLVNANDDVFELVDELVDELRRIMKEEGVEFENELEEKTKVPFHIPTIKKPQYAYNIVVDNANQPFEHVLLEKSEDGQRFIHPLEKFSVLDFVDKENIEDILPIKSLSIECTPFKLVEEVKGLKELAATLSTVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDILWLQRDFGIYVCNMFDTGQASRVLKMERYSLQHLLQHFCGITANKEYQNADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFTLSKESEGCDNPLLEVYKRSYDICKQLYEKDLLTENSFLHLYGLRRAGFNAQQLAVVSGLWEWRDDLARADDEGPGYVLPNKIILEIAKQMPVIISNLRRIVGRSKLPYVERSLDVIVNIVRHSMQNAAAFEEAALRLKEEHAASLSNVVPIKDGTEVPQTQNLKIGGAATESIGVENDTCIDISENCFSPDMEEECFQHEDKDGQGKVIALSTAKGNGEVLKLPTGAIDAPLLGYPMSEWKPRPNKKVKEEIKLEQIEPSDNLPSLFVLDNSEKLKLASEKSDPQKKPVSGSVSTCSPVGVVTVMSDSDSEDTPQLKNSNNYPGKNSLVPRKRR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01691 690 FunFam Protein RRP6-like 2 isoform A 119 390 - -
Vian2g01691 690 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 6 593 IPR045092 GO:0000175|GO:0000467
Vian2g01691 690 MobiDBLite consensus disorder prediction 633 690 - -
Vian2g01691 690 FunFam Putative exosome component 10 392 488 - -
Vian2g01691 690 ProSiteProfiles HRDC domain profile. 405 486 IPR002121 GO:0003676
Vian2g01691 690 Pfam 3'-5' exonuclease 189 351 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vian2g01691 690 SUPERFAMILY HRDC-like 388 482 IPR010997 GO:0000166|GO:0044237
Vian2g01691 690 SUPERFAMILY Ribonuclease H-like 120 385 IPR012337 -
Vian2g01691 690 Pfam PMC2NT (NUC016) domain 12 93 IPR012588 GO:0000176|GO:0006396
Vian2g01691 690 Gene3D HRDC domain 393 488 IPR044876 -
Vian2g01691 690 Pfam HRDC domain 408 461 IPR002121 GO:0003676
Vian2g01691 690 SMART hrdc7 405 485 IPR002121 GO:0003676
Vian2g01691 690 MobiDBLite consensus disorder prediction 641 682 - -
Vian2g01691 690 SMART 35exoneu6 186 355 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vian2g01691 690 CDD Rrp6p_like_exo 182 374 - -
Vian2g01691 690 Gene3D - 113 392 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01691 Vian-Chr2 34643918 34678120 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01691 K12591 - gmx:100804872 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01691 2 34643918 34678120 Vian2g01691 2 34643918 34678120 ECH