Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01679 ATGCAGGCAACTGAGACCAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATTGAGCATGTTGAGATCCTCAGTGAAGGTGGCAAATCAAAGACTGCGTATGTGACATTTAAAGAACCTAAAGCACTTGAAATTGCATTATTGTTATCGGGAGCAACAATAGTGGACCAAGTTGTGAGGATAACTCCAGCTGATAACTATGTACCAAATCATGAGATGCAGGAAGAAAGGTTGGTGGAAAATACTATAAACTTTGCTCCTTCTGAAAATGTCTCCACAGATATTGAGGAAGGAAAAGCCAGCCCCACCAATAGAAGAATCTACCTTACCAGAGCACAAGATGCAGTTACAAGTATGCTGGCAAAAGGTTCAGCAATAAGGCAGGATGCTGTGAACAAAGCTAAAGCATTTGATGAAAAACACCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACTGAGAAATTGACAGTAGGCATTGCAGCAGTGAATCAGAAAGTCAAATCTGTGGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCAGCAATAATTGCAGCGGAGAGGAAGCTGAATGACACTGGATCGGCTGTCAAAACTAGCAGATATGTGACTGCTGGAACAGCATGGTTAAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTAATATGGCTGTCTCAAACTTGACAACAAAGGAACCGTCAGTGGCTGCAGCATAG 822 0.4197 MQATETRTVQVKQLSDLAGEREIHEFFSFSGEIEHVEILSEGGKSKTAYVTFKEPKALEIALLLSGATIVDQVVRITPADNYVPNHEMQEERLVENTINFAPSENVSTDIEEGKASPTNRRIYLTRAQDAVTSMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGIAAVNQKVKSVDQRLHVSDKTMAAIIAAERKLNDTGSAVKTSRYVTAGTAWLNGAFSKVAKAGHVASTKTREKFNMAVSNLTTKEPSVAAA 273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01679 273 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Vian2g01679 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Vian2g01679 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Vian2g01679 273 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 259 - -
Vian2g01679 273 Gene3D - 1 77 IPR012677 -
Vian2g01679 273 SMART rrm1_1 8 77 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian2g01679 Vian-Chr2 34479802 34482794 Transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01679 - - gmx:100779011 470.7