Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01678 ATGGAAGTAGCTTTTTCCCCTCAAGTGCAAAAGCAGAATTTGCAAATAACAGGTCGCAAAATTTTATGTGTTGGATCCCAGAAGGATTTGTGGCTTGTTGTGCGAGAAGGATCTCTAAATGATGTAGAATTGGCCTTGGCATCATTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACATTTGGGTTGACTCCTCTTCATATTGCAAGTTGGAGAAACCATATTCCCATTGTAAGGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTACATTTTGGTCATCTTGCTGCGGCAAGCATCCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCTGTAGATCTTTTATCTGGCTCTGTATTTCAGGCTCTTGGAAATGAACACAGTTCAGTGGCAACTGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTGCCATGCAAAGTTGATTCACTTGGTGGTTCATTCATAAAGCTCATTTCTGCTGGGAAGTTCCATAGTGTGGCACTTACTGCTCGTGGAGAACTGTATACCTGGGGATTTGGAAGGGGTGGTCGTCTGGGACATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACTGTGATTGCTACTCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAACTTGGGTACCCTTCCGTTGATACGCAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAATAAACACACGGCTGTAGTTTCTGATTTAGGTGAAGTCTTTACTTGGGGTTGTAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCCTCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACACCAAAACGTGTTGTAGTTAGTAGGAACTTGAAGAAAAGTGGAAACACTCCTTTAAAATTTCACCGCAAGGAACGACTTAGTGTGGTTTCTGTAGCTGCTGGAATGGTACACAGCATGGCCCTTACAGATGATGGCGCATTATTTTATTGGGTCTCCTCGGATCCGGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGTTAACATATCAGCTGGAAAGTACTGGACTGCAGCTGTTACAGCTACTGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAAACACATTTACTAATCGTGGCTTCACTCTATCATCCTCTTTACGCTCCTAACATGATTCAGAATTCTCAGAAACTCAAGTTGAATAACGGGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAGGATATAGATTTCAGTAACATGATATCTAGTGTGCAAAATGACACTAGCAGGCAGAGATCTATACCGAGCTTAAAAAGCCTTTGTGAAAAAGTAGCTGCAGAGTGTTTAGTGGAGCCACGGAATGCAGTACAACTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTACATATTTACAGTTTCATCGCATACAATAGCAAGTGCATCACCAGATGTTCTTGCTAACCTTGAGAGGTTGCTAGACCAGAGATCATCTGAGCCATGGAGTCACCGTCGGCTTCCTACACCAACTGCTACCCTCCCTGCCATCATTAACAGCGAAGAGGATGATAGTGAGATAGATTGCAGCAGATTGAGATGCTTGAAGATAAGCAGTCTAGTGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGGAAAGGCAGTAAGAAGGGTAAACTATCAAAGAAACAAAGGAGAAAGATAGAGAGAATTAATAAACTTTCATTTTTAGAGTTGTTTGCACAGTTGCGTGATGCAAAAGATTTAGCTTTTGTAAGCAAGAAGGGTGGGCTTTCTATGTTTCTGATTCATTTCTTCTTTCCAGTCCAATACCCGTTACCTCAACTAGTAGTTCCCAGGCCATCCTTAAGGGACATCCAAATGCAACAGGGAAAGAAACAACAAAGCCTTGCACACAGTCCAACGACTAGAACATCTGGCTTTTCCATTGCTACCGGTCAAGGTGGCTCGCCTTCGGAAACCACTGGAGTGAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCATCCTCAATTCGTTCTATTCAGATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGGAGAGAGAGAAGAAAGTTTAACAGTAATATTTTTTTCAATCTAAAATTGGATGTTAAGCCGAATGAGTCAATATGGGCTAAAAAAATCAAGTCGAATAGACCTGGTTGGCTCAGACCGAAGATTGAGATGAGTCTAGTCATTTTAGGCCAAGAACAACACGCATCTCAACATAATGAACATCAATTTGAAATTCCAACCACTCTTTCAAACAAACTTTTATTTTCTTTCATTGCAATATATGAAAATTTTCGATACAATGTTTTTATAAAAAAAAAAAAACTCTCTTTTGTCTTATTTCATAATAAAATATTAGTTTCATGCTTAACTTGTTCTTGGTTATCATATATTTTTCTTTCAGTAATTACGTTTCTCAAATTTTTATTAGATTTTGATAAATTTTATAGTTATATTAAATTATTATTAAAAACCTTATCTTTAGTTGATAAATTAGGTGGACATCAATTGTTGGTAGGATCTAGGAGATATTCTTTTATTATTTATAACTTCCATATCTCAAATGTAATTCTTTCCTTCTTGAAAAGGTTGATTGGAAATCCAGATGCTGTTGAAAGTTTGTTTGAAGGTGCGCAAATGATGATCTCCACGACTCGAATATTTAGTAGAACCACTCACCTTAAACCTCACCTACCATGA 3192 0.4073 MEVAFSPQVQKQNLQITGRKILCVGSQKDLWLVVREGSLNDVELALASLKKSGGNINLRNTFGLTPLHIASWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQALGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGELYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGNTPLKFHRKERLSVVSVAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVNISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPLYAPNMIQNSQKLKLNNGDDMEELNEDILFEDIDFSNMISSVQNDTSRQRSIPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHTIASASPDVLANLERLLDQRSSEPWSHRRLPTPTATLPAIINSEEDDSEIDCSRLRCLKISSLVDIFLMTSRLQSFNLRKGSKKGKLSKKQRRKIERINKLSFLELFAQLRDAKDLAFVSKKGGLSMFLIHFFFPVQYPLPQLVVPRPSLRDIQMQQGKKQQSLAHSPTTRTSGFSIATGQGGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSRRERRKFNSNIFFNLKLDVKPNESIWAKKIKSNRPGWLRPKIEMSLVILGQEQHASQHNEHQFEIPTTLSNKLLFSFIAIYENFRYNVFIKKKKLSFVLFHNKILVSCLTCSWLSYIFLSVITFLKFLLDFDKFYSYIKLLLKTLSLVDKLGGHQLLVGSRRYSFIIYNFHISNVILSFLKRLIGNPDAVESLFEGAQMMISTTRIFSRTTHLKPHLP 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01678 1063 Gene3D - 389 510 IPR009091 -
Vian2g01678 1063 Gene3D - 122 388 IPR009091 -
Vian2g01678 1063 Gene3D - 25 121 IPR036770 -
Vian2g01678 1063 SMART ANK_2a 62 91 IPR002110 GO:0005515
Vian2g01678 1063 SMART ANK_2a 96 125 IPR002110 GO:0005515
Vian2g01678 1063 MobiDBLite consensus disorder prediction 777 813 - -
Vian2g01678 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Vian2g01678 1063 SUPERFAMILY RCC1/BLIP-II 407 507 IPR009091 -
Vian2g01678 1063 MobiDBLite consensus disorder prediction 777 815 - -
Vian2g01678 1063 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Vian2g01678 1063 SUPERFAMILY Ankyrin repeat 35 136 IPR036770 -
Vian2g01678 1063 PANTHER BTK-BINDING PROTEIN-RELATED 26 703 - -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Vian2g01678 1063 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Vian2g01678 1063 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Vian2g01678 1063 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Vian2g01678 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Vian2g01678 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Vian2g01678 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Vian2g01678 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Vian2g01678 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Vian2g01678 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Vian2g01678 1063 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Vian2g01678 1063 Pfam Ankyrin repeats (3 copies) 37 127 IPR002110 GO:0005515
Vian2g01678 1063 Gene3D Potassium Channel Kv1.1; Chain A 526 619 IPR011333 -
Vian2g01678 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Vian2g01678 1063 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Vian2g01678 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Vian2g01678 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01678 Vian-Chr2 34433022 34449847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01678 34 136 Acyl Lipid Metabolism Gene Families AT5G53470 33.981 4.03e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01678 K24810 - gmx:100800604 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01678 2 34433022 34449847 Vian2g01678 2 34433022 34449847 ECH