Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01672 ATGACCGAAATCATACCAGGATTGCAAGGGGACATCCCTCATAATTTACCAAAGGGTGTCCCTTTTATCTCTGGAAAAGAAAAAGTTATAGGCAGTGCTAAGCACTATGTGGGTGACGGTGGAACAGTCAATGGGATTAATGAGCACAACACTGTTATAGAGAGAGATGGATTGATGAAAATTCACATGCCACCTTACTTGACCTCAATCGATAAAGGTGTGGCAAGCATAATGGTCTCTTACTCCAGTTGGAATGGTGTAAAAATGCATGCTCACCATGATCTTATTACTGCCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTATTGATAGGATCACAACTCCACATCGTGCAAACATCAATTATTCAATCGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGTTTCCAAAGCTTTACACAGAATTCATAGATGGTTTATCCATGTTGGTGAAAAATGAGCGCATTCCCATGAGTCGAATTGATGATGCGGTGAGAAGAATTTTGTGGGTTAAGTTCATGATGGGTCTTTTTGAGAACCCTTATGCTGATTACAGTATGACCAGATATTTGGGAATCCAGGAGCACAGAAATTTGGCTAGAGAAGCGGTGAGAAAATCAATGGTCCTTCTGAAAAATGGTCAATCTGTTGATAAGCCTTTATTGCCTCTTCCTAAAAAGGCACCAAAAATACTTGTTGCTGGAATCCATGCAGATAATCTAGGATATCAGTGTGGTGGCTGGACTATAGAATGGCAAGGGGTCAGTGGGAACAATCTTCTCAAAGGGACCACAATTCTCAATGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGATCTACAAGGAGAACCCTGATGCAGAATTTGTTAAATCCAACGAATTTTCCTATGCCATTGTTGTAGTAGGAGAGCCTCCTTATGCTGAAACGCATGGTGACAACATGAACTTGACAATCCCAGACCCTGGTCCAGAGATGATAAGAAACGTGTGTGGAGTAACAAAATGTGTGGTTATTGTAATTTCTGGTCGTCCTTTGGTGATTGAACCATATGTTGATATGATAGATGCACTTGTTGCTGCATGGCTTCCTGGTAGCGAAGGCCAAGGTGTGGCTGATGTTCTATTTGGTGACTATGCTTTCACTGGAAAACTTCCAAGAACATGGTTCAAATCTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCCAAACTACTGAGGCCTTGTTCTCTGAGTAG 1311 0.418 MTEIIPGLQGDIPHNLPKGVPFISGKEKVIGSAKHYVGDGGTVNGINEHNTVIERDGLMKIHMPPYLTSIDKGVASIMVSYSSWNGVKMHAHHDLITAFLKNTLHFKGFVISDFEGIDRITTPHRANINYSIEAGVSAGIDMFMFPKLYTEFIDGLSMLVKNERIPMSRIDDAVRRILWVKFMMGLFENPYADYSMTRYLGIQEHRNLAREAVRKSMVLLKNGQSVDKPLLPLPKKAPKILVAGIHADNLGYQCGGWTIEWQGVSGNNLLKGTTILNAVKNTVDPETTVIYKENPDAEFVKSNEFSYAIVVVGEPPYAETHGDNMNLTIPDPGPEMIRNVCGVTKCVVIVISGRPLVIEPYVDMIDALVAAWLPGSEGQGVADVLFGDYAFTGKLPRTWFKSVDQLPMNVGDPHYDPLFPFGFGLSTQTTEALFSE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01672 436 Gene3D - 202 429 IPR036881 GO:0004553|GO:0005975
Vian2g01672 436 SUPERFAMILY (Trans)glycosidases 3 216 IPR017853 -
Vian2g01672 436 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 1 431 - -
Vian2g01672 436 FunFam Glycosyl hydrolase family protein 202 428 - -
Vian2g01672 436 Pfam Glycosyl hydrolase family 3 C-terminal domain 217 426 IPR002772 GO:0004553|GO:0005975
Vian2g01672 436 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 217 426 IPR036881 GO:0004553|GO:0005975
Vian2g01672 436 Pfam Glycosyl hydrolase family 3 N terminal domain 4 178 IPR001764 GO:0004553|GO:0005975
Vian2g01672 436 Gene3D - 1 201 IPR036962 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01672 Vian-Chr2 34377343 34379497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01672 1 428 Glycoside Hydrolase AT5G20950 70.327 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01672 K05349 - gmx:100816705 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01672 2 34377343 34379497 Vian2g01672 2 34377343 34379497 ECH