Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01638 ATGGCAATTGCACGCACCGGAGTCTATGTAGATGACTATTTGGAGTATGCCAGCACATTACCCGCTGAACTTCAGAGGCTGCTCAACACTGTCCGCGAACTCGATGAACGATCCCAATCTATGATAAACCAAACTAGGCAGCAGACAAAGTACTGTTTGGGATTCCCATCACATGGCTCTAAGAAGGGGCATCACAGTTATAATAACAATTATGGTAATGAGGACGAAGATGTAGCTTTTGAGAAAATGCGAAAAGAAATTGAGGGAAATCAGGATAGTGCATTGAGTCTATGTACTGAGAAGGTTTTGTTGGCGCGACAAGCGTATGACCTGATAGATAGCCATGTTAAACGACTTGATGAGGATTTAAACAACTTTGCTGAAGATTTAAAGCAAGAGGGTAAAATACCACCGGATGAACCAGCAATTCTGCCCCCATTGCCTATAGTCACTAAAGCTGAAAAGCGCAAGCCCATATACATAACTCCTCAGCCAAAGAGAATTGATTACAGGGATAGAGATTGGGATCGGGAGCGCGATAGGGACTTTGAGTTAATGCCTCCACCAGGAAGTCATAAGAAAGAGTATGCTACCCCCATGGATGTTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTCGGGGATATGATTGCGTGTGACAACGAAAATTGCCAAGGAGGTGAATGGTTCCACTATTCGTGTGTTGGGCTAACGCAGGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCGACTTGCATACTACTCCCCCAATGTCAACGATGA 807 0.4411 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCLGFPSHGSKKGHHSYNNNYGNEDEDVAFEKMRKEIEGNQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVTKAEKRKPIYITPQPKRIDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCILLPQCQR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01638 268 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Vian2g01638 268 SMART ING_2 9 126 IPR024610 -
Vian2g01638 268 FunFam PHD finger protein ING 205 263 - -
Vian2g01638 268 Gene3D - 5 124 - -
Vian2g01638 268 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 126 IPR024610 -
Vian2g01638 268 Coils Coil 24 44 - -
Vian2g01638 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 262 IPR013083 -
Vian2g01638 268 SMART PHD_3 213 261 IPR001965 -
Vian2g01638 268 SUPERFAMILY FYVE/PHD zinc finger 188 261 IPR011011 -
Vian2g01638 268 CDD ING_plant 17 123 - -
Vian2g01638 268 CDD PHD_ING 213 260 - -
Vian2g01638 268 PANTHER INHIBITOR OF GROWTH PROTEIN 2 261 IPR028651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01638 Vian-Chr2 34017361 34023275 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01638 - - gmx:100787916 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01638 2 34017361 34023275 Vian2g01638 2 34017361 34023275 ECH