Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01610 ATGAAGGTGGCATGTTGTAGCCCAGAAATTAATGTTCCCTACTTGGGAACCCCAAGAACAAGGTTTGGTTCCGAGGAAGCACATGTGATTCTTCAAAAATGTAGCAATTTCAAGCAGCTTAAGCAAGTGCATGGCAGAATAATCCGTTTTGGTCTCATCTATGACCAATTGCTTATGAGGAAGCTAATTCAGTTCTCTTCCTCTTATGGCAAATTGAACTATGCCACTTTGGTATTTGATCAACTCAATTCCCCAGATACCTTCACCTGGAATGTCATGATTAGAGCTTATACCATTAGCGGTTCTCCTAAAATGGCGCTTCTTTTGTTCAAGGCAATGCTGTGCCAGGGCTTTGCACCTGACAAGTTTACATACCCTTTTGTGATCAGTGCTTGCGTGGCCTCTAATGCCCTTGATTTGGGAAGAGTGACTCATGCTCTTGCCATCAAAATGGGGTTTTGGAGTGACCTTTATGTGCAGACCAACTTGATGAATCTATACTTCAAGTGTAAGGATGTCGATGATGGATGGAAGGTGTTTGATAAAATGCGTGTGCGCAACGTGTTCGCGTGGACCACTGTGATTGCTGGGTTTGTTGCTTGTGGGAGGCTGGACACTGCCAGGAAACTGTTTGAGAAAATGCCTTCCAAGAATGTTGTGTCATGGACTGCAATGATTGATGGGTATGTGAAACACGCGCAACCCGTTAAAGCGTTTAATCTGTTTGAACGAATGTTGGTTGATAATGTGAAGCCAAATGAGTACACTGTGGTGAGCTTGGTCAGAGCTTGTACTGAGATGGGTAGCCTTAGGTTGGGTAGAAGGATTCATGATTTTGTTCTAAAGAATGATTTTGAGATCGGGGCTTTCTTGGGTACCGCGCTTATAGATATGTATAGCAAGTGTGGCAGTTTGGATGAGGCAAGAAAAGTGTTTGATGTGATGCAGGTGAGAACCTTGGCCACTTGGAATACAATGATCACTAGCTTGGGTGTGCACGGGTTTAGGAGTGAAGCCATATCCCTTTTTGAAGAAATGGTGAAGGCAAACGAGGTTCCGGATGCTATCACTTTCGTGGGTGTTCTGAGTGCTTGTGTTTATTTGAATGACCTGGAACTAGCTCAGAAGTATTTCAACCTTATGACTGATCATTATGGTATAACACCTATCTTGGAACATTATGCATGCATGGTTGAAATCTATAATCCTGCTGTTGAGTTGGATGAGATTTACACTTCAGGGAGCACATTGGAAGCTAATCATGATGTTGCAGAATTGCTGCACAAGAGCAAACTCACTAATATAGATGACATAAAAAAACTTGTACAAAAGCAATACGAGGATTTGGATTCCTCAGAACTAGTTATAGATCATTCATCCACGAGCTCACAACCTCAACTCTGA 1404 0.4259 MKVACCSPEINVPYLGTPRTRFGSEEAHVILQKCSNFKQLKQVHGRIIRFGLIYDQLLMRKLIQFSSSYGKLNYATLVFDQLNSPDTFTWNVMIRAYTISGSPKMALLLFKAMLCQGFAPDKFTYPFVISACVASNALDLGRVTHALAIKMGFWSDLYVQTNLMNLYFKCKDVDDGWKVFDKMRVRNVFAWTTVIAGFVACGRLDTARKLFEKMPSKNVVSWTAMIDGYVKHAQPVKAFNLFERMLVDNVKPNEYTVVSLVRACTEMGSLRLGRRIHDFVLKNDFEIGAFLGTALIDMYSKCGSLDEARKVFDVMQVRTLATWNTMITSLGVHGFRSEAISLFEEMVKANEVPDAITFVGVLSACVYLNDLELAQKYFNLMTDHYGITPILEHYACMVEIYNPAVELDEIYTSGSTLEANHDVAELLHKSKLTNIDDIKKLVQKQYEDLDSSELVIDHSSTSSQPQL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01610 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vian2g01610 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Vian2g01610 467 Gene3D Tetratricopeptide repeat domain 271 409 IPR011990 GO:0005515
Vian2g01610 467 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 412 IPR046960 GO:0003723|GO:0009451
Vian2g01610 467 SUPERFAMILY TPR-like 187 349 IPR011990 GO:0005515
Vian2g01610 467 Pfam PPR repeat 161 188 IPR002885 -
Vian2g01610 467 Pfam PPR repeat 293 317 IPR002885 -
Vian2g01610 467 Pfam PPR repeat family 321 365 IPR002885 -
Vian2g01610 467 Pfam PPR repeat family 85 132 IPR002885 -
Vian2g01610 467 Pfam PPR repeat family 217 264 IPR002885 -
Vian2g01610 467 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 16 139 - -
Vian2g01610 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Vian2g01610 467 Gene3D Tetratricopeptide repeat domain 25 144 IPR011990 GO:0005515
Vian2g01610 467 Gene3D Tetratricopeptide repeat domain 155 270 IPR011990 GO:0005515
Vian2g01610 467 FunFam Pentatricopeptide repeat-containing protein chloroplastic 143 288 - -
Vian2g01610 467 FunFam pentatricopeptide repeat-containing protein At2g33680 292 455 - -
Vian2g01610 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vian2g01610 467 NCBIfam pentatricopeptide repeat 161 188 IPR002885 -
Vian2g01610 467 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Vian2g01610 467 NCBIfam pentatricopeptide repeat 190 220 IPR002885 -
Vian2g01610 467 NCBIfam pentatricopeptide repeat 293 317 IPR002885 -
Vian2g01610 467 NCBIfam pentatricopeptide repeat 88 121 IPR002885 -
Vian2g01610 467 NCBIfam pentatricopeptide repeat 220 254 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01610 Vian-Chr2 33425772 33427175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01610 78 453 Glycoside Hydrolase AT3G49170 28.634 2.17e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01610 - - gmx:100789790 814.298